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Identification and Characterization of Bacterial and Host Factors Involved in Microtubule Disassembly in Epithelial Cells during <i>Edwardsiella</i> Infections

2017· article· en· W4389019695 on OpenAlexaffabout
Priyanka Aggarwal, Qiyao Wang, Qin Liu, Ka Yin Leung, Julian A. Guttman

Bibliographic record

VenueThe FASEB Journal · 2017
Typearticle
Languageen
FieldImmunology and Microbiology
TopicAquaculture disease management and microbiota
Canadian institutionsTrinity Western UniversityWestern UniversitySimon Fraser University
Fundersnot available
KeywordsMicrotubuleBiologyMicrobiologyCytoskeletonCell biologyProtein subunitGeneCellGenetics

Abstract

fetched live from OpenAlex

Enteric bacteria from the genus Edwardsiella cause great losses to a variety of commercially important fish such as the Japanese Eel, Channel Catfish and Turbot. In humans, they cause a gastroenteritis‐like phenotype. These bacteria are known to infect both inflammatory and epithelial cells. Although macrophages are by far the best‐studied cell types during these infections, epithelial cell studies have lagged primarily due to poor infection models. Because these bacteria resemble other intestinal pathogens and because the host cytoskeleton is a common target of intestinal pathogens, we hypothesized that similar infections could be established to evaluate host actin, intermediate filament and microtubule alterations. Here we established two different epithelial cell infections using HeLa and CaCo‐2 cells and demonstrate that only the microtubule cytoskeleton is noticeably altered by these bacteria. We found that microtubules are initially severed then completely disassembled during Edwardsiella infections . To identify the bacterial and host components involved in this phenotype, we screened a 2,758 mutant Edwardsiella genome transposon insertion library and localized all known host microtubule‐severing enzymes (katanin, spastin, and fidgetin). Using the screening approach we were able to narrow the 2,758 Edwardsiella mutants/genes to 15 that are key players in causing MT disassembly in epithelial cells. Immunolocalization experiments showed the katanin subunit A‐like 1, katanin subunit B 1, and katanin subunit B‐like 1 at microtubule cut sites, suggesting their involvement in the microtubule disassembly event. This work not only provides the first evidence of host cytoskeletal alterations during Edwardsiella infections, but also provides a resource for further characterization of molecular components involved in microtubule disassembly in general. Support or Funding Information Funding source: Natural Sciences and Engineering Research Council of Canada (NSERC)and SFU BISC department funds

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.009
GPT teacher head0.217
Teacher spread0.208 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes2
Has abstractyes

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