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PSEN1 as an Adjunct for Diagnosis of Human Myocarditis

2017· article· en· W4389019927 on OpenAlexaff
Paul Hanson, Erika Jang, Harpreet Rai, Angela Y. Chang, Angela Y Mo, Bruce M. McManus, Michael A. Seidman

Bibliographic record

VenueThe FASEB Journal · 2017
Typearticle
Languageen
FieldMedicine
TopicViral Infections and Immunology Research
Canadian institutionsProvidence Health CareUniversity of British Columbia
Fundersnot available
KeywordsMedicineMyocarditisDilated cardiomyopathyPathologyCardiologyCardiomyopathyCoronary artery diseaseInternal medicineHeart failure

Abstract

fetched live from OpenAlex

Background Myocarditis, defined as inflammation of the heart muscle, is a spectrum of conditions causing considerable morbidity and mortality, resulting from various etiologies, including infection, autoimmunity, or chemical exposure. As such, diagnosing myocarditis can be quite difficult and determining etiology even more so. The gold standard of diagnosis is endomyocardial biopsy showing inflammation with or without myocyte damage in the absence of an ischemic event. However, due to the spatial and structural heterogeneity of myocarditis, diagnostic sensitivity is estimated as low as 30%. To improve upon this, we examined several markers implicated in the pathogenesis of viral myocarditis in animal models as possible diagnostic adjuncts. PSEN1 (the gene encoding presenilin 1) emerged as a promising candidate. This study aims to formally evaluate PSEN1 as a diagnostic adjunct. Design Fifty (50) cases were examined for PSEN1 staining (20 lymphocytic active or healing myocarditis, 4 eosinophilic myocarditis, 4 idiopathic dilated cardiomyopathy, 4 hypertrophic cardiomyopathy, 4 sarcoidosis, 4 coronary artery disease, 3 transplant rejection, 1 Lyme disease, 1 toxoplasmosis, and 5 normal controls). All cases were obtained from the Cardiovascular Tissue Registry in the Centre for Heart Lung Innovation, under approved human ethics protocols. Levels of PSEN1 were evaluated using colour segmentation and scoring conducted by three individual subspecialty cardiac pathologists blinded to diagnosis. Statistical analysis was performed using Mann Whitney U test and receiver operating characteristics (ROC) curves. Results Colour segmentation and pathologist scoring correlated with each other well (Spearman's rho correlation coefficient 0.71 or better in all comparisons). PSEN1 is expressed at significantly higher levels in lymphocytic myocarditis cases as compared to normals and to all other pathologies (all pvalues less than 0.005). The ROC curves for diagnosing myocarditis as compared to other pathologies using PSEN1 staining have areas under the curve (AUCs, or cstatistics) ranging from 0.78 to 0.88. Of note, several “false positive” cases were those with idiopathic dilated cardiomyopathy, such cardiomyopathy reflects the end stage of a prior lymphocytic myocarditis. Case subset analyses and validation on biopsy specimens are under way. Conclusion PSEN1 immunohistochemistry appears to be a helpful diagnostic adjunct for identifying myocarditis, even in minimally inflamed specimens and in tissue obtained long after the initial insult. Support or Funding Information Funding and support from St. Paul's Foundation

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.004
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0030.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.071
GPT teacher head0.396
Teacher spread0.325 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2017
Admission routes1
Has abstractyes

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