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Regulation of Twist1 and Snail1 Gene Expression in Cardiac Fibroblasts by Scleraxis

2017· article· en· W4389023650 on OpenAlexafffundabout
Hamza A. Safi, Danah S. Al‐Hattab, Raghu S. Nagalingam, Michael P. Czubryt

Bibliographic record

VenueThe FASEB Journal · 2017
Typearticle
Languageen
FieldMedicine
TopicTissue Engineering and Regenerative Medicine
Canadian institutionsUniversity of Manitoba
FundersCanadian Institutes of Health Research
KeywordsTranscription factorCell biologyEpithelial–mesenchymal transitionPromoterBiologyMyofibroblastCardiac fibrosisRegulation of gene expressionGene expressionFibrosisCancer researchGeneGeneticsDownregulation and upregulationMedicinePathology

Abstract

fetched live from OpenAlex

Cardiac fibrosis causes progressive cardiac stiffening due to abnormal deposition of extracellular matrix (ECM) and alters electrical conduction of the action potential, resulting in heart failure and death. Cardiac fibroblasts largely arise from epithelial precursors during development via epithelial‐to‐mesenchymal transition (EMT), and upon injury or stress, are further converted to an activated state – myofibroblasts – which express a variety of pro‐fibrotic genes responsible for ECM synthesis and deposition. Our previous data suggested that the transcription factor scleraxis plays a key role in regulating cardiac fibroblast cell fate, including EMT and myofibroblast conversion. Here, we examined the role of scleraxis in transactivating expression of genes encoding key EMT regulators including the basic helix‐loop‐helix transcription factor Twist1 and the zinc finger transcription factor Snail1. Over‐expression of scleraxis in NIH3T3 fibroblasts up‐regulated Twist1 and Snail1 expression. Using luciferase reporter assays coupled with point mutagenesis, we found that scleraxis is sufficient to directly transactivate the Twist1 and Snail1 gene promoters, and identified the responsible scleraxis binding sites in each promoter. Loss of scleraxis conversely attenuated expression of these genes. Together, our data indicates that scleraxis controls EMT via direct upstream regulation of these key EMT regulatory genes. Support or Funding Information Supported by the Canadian Institutes of Health Research (MOP136862 to MPC), Research Manitoba (RSN) and the University of Manitoba GETS Program (HAS, DSA, RSN).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.256
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2017
Admission routes3
Has abstractyes

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