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LCT Gene Variant ‐13910 C>T, Dairy Intake, and 25‐Hydroxyvitamin D Plasma Levels: A Mendelian Randomization Study

2016· article· en· W4389025039 on OpenAlexafffundabout
Ohood Alharbi, Ahmed El‐Sohemy

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicDigestive system and related health
Canadian institutionsUniversity of Toronto
FundersAdvanced Foods and Materials Network
KeywordsGenotypeMendelian randomizationVitamin D and neurologyGenotypingMedicineAnimal scienceInternal medicineLactose intoleranceEndocrinologyBiologyLactoseFood scienceGeneticsGeneGenetic variants

Abstract

fetched live from OpenAlex

This abstract is from the Experimental Biology 2016 Meeting. There is no full text article associated with this abstract published in The FASEB Journal . Background The LCT ‐13910 C>T gene variant is associated with lactose intolerance (LI) in different ethnic groups. Individuals with LI often limit or avoid dairy consumption, a main dietary source of vitamin D in North America, which may lead to inadequate vitamin D intake. However, the association between LCT genotype and circulating 25(OH)‐vitamin D levels is not clear. The objective of this study was to determine the prevalence of genotypes predictive of LI in different ethnic groups living in Canada and to determine whether LCT genotype is associated with dairy intake and 25(OH)D plasma levels. Methods Fasting blood samples were drawn from a total of 1,400 participants aged 20–29 years from the Toronto Nutrigenomics and Health Study for genotyping and plasma 25(OH)D analysis. Dairy intake was assessed using a one‐month, 196‐item Toronto‐modified Willett food frequency questionnaire. The prevalence of the LI gene variant LCT ‐13910C>T was compared using. Using the Mendelian randomization (MR) approach, we used analysis of covariance to determine the association between LCT genotypes and dairy intake, as well as 25(OH)D levels. Results Approximately 33% of Caucasians, 99% of East Asians, 74% of South Asians, and 59% of those with other or mixed ethnicities had the CC genotype predictive of LI. The CC genotype was significantly associated with lower total dairy intake (p=0.001), lower skim milk intake (p=0.002), and lower plasma 25(OH)D (p=0.0004). The CC and the CT genotypes were associated with a two‐fold, and 50% greater risk, respectively, of suboptimal plasma 25(OH)D. Conclusion The CC genotype predictive of LI is associated with lower plasma 25(OH)D, which is due, at least in part, to lower intake of dairy products, particularly skim milk. Increased risk of suboptimal levels of vitamin D was also observed among those with the CT genotype suggesting an intermediate effect of heterozygotes. Support or Funding Information: Research support from the Advanced Foods and Materials Network

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.200
Threshold uncertainty score0.337

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.251
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes3
Has abstractyes

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