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Inhibition of UPR <sup>ER</sup> Does Not Impair Signaling to Mitochondrial Biogenesis During Chronic Contractile Activity

2016· article· en· W4389027044 on OpenAlexafffund
Ashley N. Oliveira, Jonathan M. Memme, David A. Hood

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEndoplasmic Reticulum Stress and Disease
Canadian institutionsYork University
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsUnfolded protein responseXBP1Tauroursodeoxycholic acidMitochondrial biogenesisEndoplasmic reticulumCell biologyProteostasisATF6Downregulation and upregulationMitochondrionChemistryRetrograde signalingBiologyBiochemistryRNA splicing

Abstract

fetched live from OpenAlex

Cellular stresses that perturb the protein folding environment can be detrimental to cell health and may provoke apoptosis. In order to combat these stresses, the cell is equipped with compartment‐specific mechanisms to help regain homeostasis: the mitochondrial (UPR mt ) and endoplasmic reticulum (UPR ER ) unfolded protein responses. Acute exercise is capable of eliciting the UPR, however the role of the UPR in chronic exercise‐induced adaptations is still unclear. Exercise training can be modeled by direct stimulation (6V, 10Hz; 3hrs/day) of the peroneal nerve in Sprague Dawley rats to induce chronic contractile activity (CCA) for 7 days. We can model endurance training in one hindlimb, while the other serves as an internal control. Previously, we have shown that UPR ER signaling is upregulated during the early phases of CCA, as shown by 1.5–4 fold increases in BiP, CHOP and XBP1 spliced mRNA. We then sought to investigate the role of the UPR ER in mitochondrial adaptations by inhibiting UPR signaling with tauroursodeoxycholic acid (TUDCA). TUDCA treatment during 7 days of CCA attenuated CHOP activation by 63%, suggesting effective impairment of UPR ER signaling. Despite this, mitochondrial biogenesis (MB) was not reduced by TUDCA treatment during CCA, evidenced by comparable 22–24% increases in COX activity, a measure of mitochondrial content, after 7 days of CCA. Since the vast majority of proteins that are required for MB are nuclear‐encoded and require import into the organelle, this could imply an important role for protein import in UPR mt function. Tim23, a major translocase of the inner membrane, increased by an average of 23% as early as 1 day of CCA, suggesting a greater potential for the transport of nuclear‐transcribed proteins into the matrix. If protein import into the matrix is increased, this could be accompanied by a greater protein folding/handling capacity. Using this CCA model we can further investigate the role of protein import and its relationship with the UPR mt in potentially mediating mitochondrial adaptations to chronic exercise. Support or Funding Information Supported by NSERC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.229
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes2
Has abstractyes

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