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Regulation of Fibronectin Gene Expression by Scleraxis

2016· article· en· W4389034132 on OpenAlexafffundabout
Michael P. Czubryt, Justin J. Lin, Rushita A. Bagchi, Ryan Wang

Bibliographic record

VenueThe FASEB Journal · 2016
Typearticle
Languageen
FieldMedicine
TopicCardiac Fibrosis and Remodeling
Canadian institutionsUniversity of Manitoba
FundersCanadian Institutes of Health Research
KeywordsFibronectinChromatin immunoprecipitationCell biologyTransactivationTranscription factorBiologyMolecular biologyRegulation of gene expressionGene expressionReporter geneLuciferaseTranscriptional regulationPromoterExtracellular matrixGeneTransfectionGenetics

Abstract

fetched live from OpenAlex

The glycoprotein fibronectin is a key component of the extracellular matrix (ECM), linking myriad ECM components such as collagen to one another as well as to cell surface integrins and contributing to basal tissue structure. Up‐regulation of fibronectin occurs in response to injury, and increased fibronectin expression is an important feature of pathological cardiac fibrosis, however the molecular regulators of this process are incompletely defined. We previously found that the transcription factor scleraxis regulates the expression of numerous ECM components, and that scleraxis is up‐regulated by pro‐fibrotic stimuli, thus our objective was to determine the effect of scleraxis on fibronectin expression. Transfection of NIH‐3T3 fibroblasts with scleraxis resulted in a three‐fold increase in fibronectin gene expression. In silico analysis of the human fibronectin gene promoter sequence revealed two putative E‐box sequences to which scleraxis may bind. Using chromatin immunoprecipitation assays, we confirmed the occupancy of these sites by scleraxis in human cardiac myofibroblasts, and demonstrated the ability of scleraxis to bind these E‐boxes using electrophoretic mobility shift assays. By luciferase gene reporter experiments, we found that scleraxis transactivates the fibronectin gene promoter. Site‐directed mutagenesis of single E‐boxes significantly reduced promoter transactivation, with complete abrogation of scleraxis‐mediated reporter activity when both E‐boxes were mutated. Our data demonstrates that scleraxis is a potent transcriptional regulator of fibronectin gene expression, reveals the mechanism by which this regulation is achieved, and suggests that scleraxis‐mediated fibronectin expression may contribute to fibrosis. Support or Funding Information Supported by the Canadian Institutes of Health Research (MOP‐136862 to MPC).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.016
Threshold uncertainty score0.206

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.018
GPT teacher head0.250
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2016
Admission routes3
Has abstractyes

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