MétaCan
Menu
Back to cohort
Record W4389410269 · doi:10.1101/2023.12.04.569987

Diversity of Insecticidal PA1b Homologs among Legume Seeds from Middle Eastern Region

2023· preprint· en· W4389410269 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

fundA Canadian funder is recorded on the work.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiochemical and Structural Characterization
Canadian institutionsnot available
FundersInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'EnvironnementInstitut National des Sciences Appliquées de LyonUniversité LibanaiseAgence Universitaire de la FrancophonieIndian National Science Academy
KeywordsFabaceaeBiologyLegumeSubfamilyPhylogenetic treePisumSativumStorage proteinGenePhylogeneticsEvolutionary biologyBotanyGenetics

Abstract

fetched live from OpenAlex

Abstract Legumes play a central role in various food systems, with significant socio-economic and environmental impacts. Their high protein content, composed mainly of globulins and albumins, makes them valuable for human food and animal feed. Among the albumins, is Pea Albumin 1 b (PA1b), a 37 amino acid peptide, extracted from the seeds of the pea Pisum sativum . The protein displays the knottin scaffold and exhibits potent insecticidal activity against certain insects including cereal weevils and mosquitoes. This toxicity is attributed to the coexistence of several isoforms in peas. The natural diversity of PA1b-like molecules within the legume species of the Fabaceae family has been studied using various molecular, biochemical, and bioinformatic tools. Several A1 genes coding for this peptide have been characterized in soybeans, bean, barrel medick and other legume species. The aim of is study is to precisely characterize partial A1 genes in legumes of the Faboideae subfamily from the Middle East region using PCR homology. Specifically, the research focuses on the sequence structure of Pea Albumin 1 b (PA1b) variants and establishes phylogenetic relationships between these sequences and publicly available A1b homologs. The toxic effects of seed flour containing PA1b-like molecules are assessed, demonstrating that the newly characterized PA1b homologs retain structural conservation. The study observes both conservation and diversification among A1b homologs, consistent with the divergence of lineages within the Fabaceae family. The toxic effects associated with putative A1b molecules are found across different species and within the same species from different geographical origins. In particular, novel candidates such as Vicia sativa and Medicago minima show promising insecticidal A1b activity. Further analysis of isoforms from these species, including an examination of their expression in different tissues and organs should be undertaken to facilitate the potential use of A1b molecules in agricultural practice.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.238
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.198
Teacher spread0.175 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it