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Record W4389565713 · doi:10.1101/2023.12.08.23299726

Evaluation of FluSight influenza forecasting in the 2021-22 and 2022-23 seasons with a new target laboratory-confirmed influenza hospitalizations

2023· preprint· en· W4389565713 on OpenAlexaff
Sarabeth M. Mathis, Alexander E. Webber, Tomás M. León, Erin L. Murray, Monica Sun, Lauren A. White, Logan Brooks, Alden Green, Addison J. Hu, Daniel J. McDonald, Roni Rosenfeld, Dmitry Shemetov, Ryan J. Tibshirani, Sasikiran Kandula, Sen Pei, Jeffrey Shaman, Rami Yaari, Teresa K. Yamana, Pulak Agarwal, Srikar Balusu, Gautham Gururajan, Harshavardhan Kamarthi, B. Aditya Prakash, Rishi Raman, Alexander Rodríguez, Zhiyuan Zhao, Akilan Meiyappan, Shalina Omar, Prasith Baccam, Heidi Gurung, Steve A. Stage, Brad T. Suchoski, Marco Ajelli, Allisandra G. Kummer, Maria Litvinova, Paulo C. Ventura, Spencer Wadsworth, Jarad Niemi, Erica Carcelen, Alison L. Hill, Sung-mok Jung, Joseph C. Lemaitre, Justin Lessler, Sara L. Loo, Clifton McKee, K.T. Sato, Claire P. Smith, Shaun Truelove, Thomas McAndrew, Wenxuan Ye, Nikos I Bosse, William S. Hlavacek, Yen Ting Lin, Abhishek Mallela, Ye Chen, Shelby M. Lamm, Jaechoul Lee, Richard G. Posner, Amanda C. Perofsky, Cécile Viboud, Leonardo Clemente, Fred Lu, Austin G. Meyer, Mauricio Santillana, Matteo Chinazzi, Jessica T. Davis, Kunpeng Mu, Ana Pastore y Piontti, Alessandro Vespignani, Xinyue Xiong, M. Ben-Nun, Pete Riley, James Turtle, Chis Hulme-Lowe, Shakeel Jessa, VP Nagraj, Stephen Turner, Desiree Williams, Avranil Basu, John M. Drake, Spencer J. Fox, Graham Casey Gibson, Ehsan Suez, Edward W. Thommes, M Cojocaru, Estee Y. Cramer, Aaron Gerding, Ariane Stark, Evan L Ray, Nicholas G Reich, Li Shandross, Nutcha Wattanachit, Yijin Wang, Martha Zorn, Majd Al Aawar, Ajitesh Srivastava, Lauren Ancel Meyers, Aniruddha Adiga, Benjamin Hurt, Gursharn Kaur, Bryan Lewis, Madhav Marathe, Srinivasan Venkatramanan, P. J. Butler, Andrew Farabow, Nikhil Muralidhar, Naren Ramakrishnan, Carrie Reed, Matthew Biggerstaff, Rebecca K. Borchering

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldMedicine
TopicInfluenza Virus Research Studies
Canadian institutionsUniversity of GuelphUniversity of British Columbia
FundersCenters for Disease Control and PreventionResearch Institute, Georgia Institute of TechnologyCouncil of State and Territorial EpidemiologistsNational Institutes of HealthNational Science Foundation
KeywordsVirologySeasonal influenzaCoronavirus disease 2019 (COVID-19)MedicineEnvironmental healthInternal medicineInfectious disease (medical specialty)Disease

Abstract

fetched live from OpenAlex

Abstract Accurate forecasts can enable more effective public health responses during seasonal influenza epidemics. Forecasting teams were asked to provide national and jurisdiction-specific probabilistic predictions of weekly confirmed influenza hospital admissions for one through four weeks ahead for the 2021-22 and 2022-23 influenza seasons. Across both seasons, 26 teams submitted forecasts, with the submitting teams varying between seasons. Forecast skill was evaluated using the Weighted Interval Score (WIS), relative WIS, and coverage. Six out of 23 models outperformed the baseline model across forecast weeks and locations in 2021-22 and 12 out of 18 models in 2022-23. Averaging across all forecast targets, the FluSight ensemble was the 2 nd most accurate model measured by WIS in 2021-22 and the 5 th most accurate in the 2022-23 season. Forecast skill and 95% coverage for the FluSight ensemble and most component models degraded over longer forecast horizons and during periods of rapid change. Current influenza forecasting efforts help inform situational awareness, but research is needed to address limitations, including decreased performance during periods of changing epidemic dynamics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.036
Threshold uncertainty score0.071

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.162
GPT teacher head0.395
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2023
Admission routes1
Has abstractyes

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