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Record W4389985347 · doi:10.1101/2023.12.19.572366

A functional perspective on the conditional covariance comparison problem in dementia analysis

2023· preprint· en· W4389985347 on OpenAlexfundno aff
Calvin Guan, Ashis Gangopadhyay

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2023
Typepreprint
Languageen
FieldComputer Science
TopicBayesian Methods and Mixture Models
Canadian institutionsnot available
FundersJanssen Alzheimer Immunotherapy Research And DevelopmentJohnson and Johnson Pharmaceutical Research and DevelopmentJanssen Research and DevelopmentNational Institute of Biomedical Imaging and BioengineeringCanadian Institutes of Health ResearchMeso Scale DiagnosticsJohnson and JohnsonNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiPfizerBioClinicaBiogenEli Lilly and CompanyU.S. Department of DefenseAlzheimer's Disease Neuroimaging InitiativeNovartis Pharmaceuticals CorporationBristol-Myers SquibbF. Hoffmann-La RocheAlzheimer's Drug Discovery FoundationMerckNational Institute on AgingAlzheimer's Association
KeywordsPerspective (graphical)CovarianceDementiaPsychologyEconometricsCognitive psychologyMathematicsComputer scienceStatisticsArtificial intelligenceMedicineInternal medicineDisease

Abstract

fetched live from OpenAlex

Although there are many methods available in the literature to compare the covariance structures of two populations, few are suitable for clinical application due to the inability to account for covariate(s) that affect the dependence structure of the variables being investigated. A common method is to adjust the effect of the covariates via a linear model and work with the resulting residuals. However, removing the effects of the covariates could potentially eliminate valuable information from the analysis. We propose a functional nonparametric covariance matrix estimator to account for any given value in the covariate(s), which allows a comparison of the functional covariance structures of the multivariate data. This comparison is facilitated via a test statistic involving the first eigenvalue of the combined form of covariance matrices of the two groups. Three different approaches, namely, the parametric Tracy-Widom, the semi-parametric Forkman’s test, and the nonparametric Permutation method, are used to compute the approximate p-values of the test statistic. We have conducted extensive simulation studies to determine the type I error and power of the proposed hypothesis testing methods and developed practical recommendations for implementing this novel approach. Finally, we apply our methods to the Alzheimer’s Disease Neuroimaging Initiative (ADNI) study to compare cerebrospinal fluid (CSF) biomarkers between dementia and non-dementia cohorts, which offers a fascinating insight into the differences between covariance structures of biomarkers amyloid β (1-42) (A β 42), total tau (tau), and phosphorylated tau (ptau) for given values of age, sex, and years of education.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.963
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.038
GPT teacher head0.269
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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