Differences in pathology, brain atrophy, and WMHs across APOE subtypes
Bibliographic record
Abstract
Abstract Background The apolipoprotein (APOE) e4 allele is a known risk factor for Alzheimer’s disease (AD), while the e2 allele is thought to be protective. As few studies have examined the relationship between brain pathologies, atrophy, and white matter hyperintensities (WMHs) and APOE status in those with the e2e4 genotype, we do so here. Methods We analyzed Alzheimer’s Disease Neuro Imaging participants that had APOE genotyping and at least one of the following metrics: regional WMH load (obtained using Dadar 2018); ventricle size, hippocampal (HC) and entorhinal cortex (EC) volume, amyloid level (i.e., AV‐45), and phosphorylated tau (pTau), all downloaded from LONI. Participants were divided into one of four APOE allele profiles (E4 = e4e4 or e3e4; E2 = e2e2 or e2e3; E3 = e3e3; or E24 = e2e4, Fig.1). Linear mixed effects models examined the relationship between APOE profiles and each pathology while controlling for age, sex, education, and diagnostic status. Results At baseline (Fig.2), E4 exhibited increased pTau (p<.001) compared to E2 and E3 and smaller HC and EC volumes than all other APOE profiles (p<.01). The E24 group exhibited smaller ventricles than E3 and E4 (p<.05). The E2 group exhibited less amyloid than all other APOE profiles (p<.001), while E4 and E24 had more amyloid compared to E3 (p<.001). Longitudinally (Fig.3), ventricular enlargement and HC atrophy significantly differed between all profiles (p<.001). Furthermore, E2 was observed to have slower WMH accumulation compared to all other profiles (p<.001), while E4 exhibited faster accumulation compared to E3 (p<.001). The E4 group exhibited increased EC atrophy compared to E3 and E2 (p<.001), and E24 exhibited more atrophy than E2 (p = .015). Amyloid increased faster in the E4 group compared to E3 and E2 (p<.001), while E2 amyloid progressed slower than E3 (p = .005). Conclusions APOE E4 positivity is associated with increased baseline and greater accumulation of pathologies and rates of neurodegeneration. APOE E2 positivity is associated with reduced pathology burden (i.e., WMH and amyloid) and less neurodegeneration as measured by ventricle size and hippocampal and entorhinal cortex volume over time. APOE E2E4 is similar to E4 (i.e., increased neurodegeneration and pathology burden) but with a slightly slower rate of change.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.002 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.001 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.003 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".