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Human inherited CCR2 deficiency underlies progressive polycystic lung disease

2023· article· en· 53 citations· W4390350774 on OpenAlex· 10.1016/j.cell.2023.11.036

Why is this work in the frame?

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

Canadian affiliationAn author listed a Canadian institution. This is the only route the usual frame has.
Canadian funderA Canadian agency funded it. The work may carry no Canadian affiliation at all.

Full frame distilled prediction

Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

Candidate categories
Insufficient payload (model declined to judge)
Consensus categories
none
Domain
Candidate signal: noneConsensus signal: none
Study design
Candidate signal: ObservationalConsensus signal: none
Genre
Candidate signal: EmpiricalConsensus signal: Empirical
Teacher disagreement score
0.740
Threshold uncertainty score
1.000
Validation status
machine_predicted_unvalidated · codex-gemma-dda1882f352a

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.001

Machine scores (provisional)

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Opus teacher head0.058
GPT teacher head0.393
Teacher spread
0.335 · how far apart the two teachers sit on this one work
Validation status
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Abstract

We describe a human lung disease caused by autosomal recessive, complete deficiency of the monocyte chemokine receptor C-C motif chemokine receptor 2 (CCR2). Nine children from five independent kindreds have pulmonary alveolar proteinosis (PAP), progressive polycystic lung disease, and recurrent infections, including bacillus Calmette Guérin (BCG) disease. The CCR2 variants are homozygous in six patients and compound heterozygous in three, and all are loss-of-expression and loss-of-function. They abolish CCR2-agonist chemokine C-C motif ligand 2 (CCL-2)-stimulated Ca 2+ signaling in and migration of monocytic cells. All patients have high blood CCL-2 levels, providing a diagnostic test for screening children with unexplained lung or mycobacterial disease. Blood myeloid and lymphoid subsets and interferon (IFN)-γ- and granulocyte-macrophage colony-stimulating factor (GM-CSF)-mediated immunity are unaffected. CCR2-deficient monocytes and alveolar macrophage-like cells have normal gene expression profiles and functions. By contrast, alveolar macrophage counts are about half. Human complete CCR2 deficiency is a genetic etiology of PAP, polycystic lung disease, and recurrent infections caused by impaired CCL2-dependent monocyte migration to the lungs and infected tissues.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

The record

Venue
Cell
Topic
Neonatal Respiratory Health Research
Field
Medicine
Canadian institutions
McGill University
Funders
H2020 European Research CouncilNational Center for Advancing Translational SciencesNational Cancer InstituteNational Heart, Lung, and Blood InstituteInstituto Nacional del CáncerNational Institutes of HealthCanadian Institutes of Health ResearchUniversité de ParisHonjo International Scholarship FoundationAgence Nationale de Recherches sur le Sida et les Hépatites ViralesAssistance Publique - Hôpitaux de ParisDivision of Agriculture and Natural Resources, University of CaliforniaUniversité de StrasbourgInstitut National de la Santé et de la Recherche MédicaleInstitut des maladies génétiques ImagineDeutsche ForschungsgemeinschaftVaccine Research CenterTexas Biomedical Research InstituteFondation pour la Recherche MédicaleRockefeller UniversityEuropean Molecular Biology OrganizationSt. Giles FoundationAmerican Thoracic SocietyCentre National de la Recherche ScientifiqueFondation Bettencourt SchuellerNational Institute of Allergy and Infectious DiseasesAgence Nationale de la RechercheHoward Hughes Medical Institute
Keywords
BiologyDiseaseLungLung diseaseGeneticsInternal medicine
Has abstract in OpenAlex
yes