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Record W4390450416 · doi:10.1101/2023.12.29.23300642

Five dominant dimensions of brain aging are identified via deep learning: associations with clinical, lifestyle, and genetic measures

2023· preprint· en· W4390450416 on OpenAlexafffund
Zhijian Yang, Junhao Wen, Güray Erus, Sindhuja Tirumalai Govindarajan, Randa Melhem, Elizabeth Mamourian, Yuhan Cui, Dhivya Srinivasan, Ahmed Abdulkadir, Paraskevi Parmpi, Katharina Wittfeld, Hans J. Grabe, Robin Bülow, Stefan Frenzel, Duygu Tosun, Murat Bilgel, Yang An, Dahyun Yi, Daniel S. Marcus, Pamela LaMontagne, Tammie L.S. Benzinger, Susan R. Heckbert, Thomas R. Austin, Shari R. Waldstein, Michele K. Evans, Alan B. Zonderman, Lenore J. Launer, Aristeidis Sotiras, Mark A. Espeland, Colin L. Masters, Paul Maruff, Jürgen Fripp, Arthur W. Toga, Sid E. O’Bryant, M. Mallar Chakravarty, Sylvia Villeneuve, Sterling C. Johnson, John C. Morris, Marilyn S. Albert, Kristine Yaffe, Henry Völzke, Luigi Ferrucci, Nick Bryan, Russell T. Shinohara, Yong Fan, Mohamad Habes, Paris Alexandros Lalousis, Nikolaos Koutsouleris, David A. Wolk, Susan M. Resnick, Haochang Shou, Ilya M. Nasrallah, Christos Davatzikos

Bibliographic record

VenuemedRxiv · 2023
Typepreprint
Languageen
FieldNeuroscience
TopicFunctional Brain Connectivity Studies
Canadian institutionsMontreal Neurological Institute and HospitalMcGill UniversityDouglas Mental Health University InstituteArtificial Intelligence in Medicine (Canada)
FundersGenentechIXICOH. Lundbeck A/SServierSiemens HealthineersEisaiBundesministerium für Bildung und ForschungNational Institutes of HealthSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungEuropean Bioinformatics InstitutePfizerNovartis Pharmaceuticals CorporationBiogenEli Lilly and CompanyBristol-Myers SquibbBioClinicaAlzheimer's Disease Neuroimaging InitiativeMeso Scale DiagnosticsNational Institute on AgingAlzheimer's AssociationCanadian Institutes of Health ResearchNational Science Foundation
KeywordsPsychologyBrain agingCognitive psychologyDevelopmental psychologyGerontologyEvolutionary biologyArtificial intelligenceClinical psychologyNeuroscienceCognitionMedicineBiologyComputer science

Abstract

fetched live from OpenAlex

Brain aging is a complex process influenced by various lifestyle, environmental, and genetic factors, as well as by age-related and often co-existing pathologies. MRI and, more recently, AI methods have been instrumental in understanding the neuroanatomical changes that occur during aging in large and diverse populations. However, the multiplicity and mutual overlap of both pathologic processes and affected brain regions make it difficult to precisely characterize the underlying neurodegenerative profile of an individual from an MRI scan. Herein, we leverage a state-of-the art deep representation learning method, Surreal-GAN, and present both methodological advances and extensive experimental results that allow us to elucidate the heterogeneity of brain aging in a large and diverse cohort of 49,482 individuals from 11 studies. Five dominant patterns of neurodegeneration were identified and quantified for each individual by their respective (herein referred to as) R-indices. Significant associations between R-indices and distinct biomedical, lifestyle, and genetic factors provide insights into the etiology of observed variances. Furthermore, baseline R-indices showed predictive value for disease progression and mortality. These five R-indices contribute to MRI-based precision diagnostics, prognostication, and may inform stratification into clinical trials.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.013

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.006
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.075
GPT teacher head0.323
Teacher spread0.248 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2023
Admission routes2
Has abstractyes

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