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Record W4390576813 · doi:10.1084/jem.20231353

Higher COVID-19 pneumonia risk associated with anti-IFN-α than with anti-IFN-ω auto-Abs in children

2024· article· en· W4390576813 on OpenAlexaff
Paul Bastard, Adrian Gervais, Maki Taniguchi, Liisa Saare, Karita Särekannu, Tom Le Voyer, Quentin Philippot, Jérémie Rosain, Lucy Bizien, Takaki Asano, Marina García-Prat, Alba Parra-Martínez, Mélanie Migaud, Miyuki Tsumura, Francesca Conti, Alexandre Bélot, Jacques G. Rivière, Tomohiro Morio, Junko Tanaka, Étienne Javouhey, Filomeen Haerynck, Sotiriјa Duvlis, Tayfun Özçelık, Sevgi Keleş, Yacine Tandjaoui-Lambiotte, Simon Escoda, M. Husain, Qiang Pan‐Hammarström, Lennart Hammarström, Gloria Ahlijah, A Haidar, Camille Soudée, Vincent Arseguel, Hassan Abolhassani, Sabina Sahanic, Ivan Tancevski, Yoko Nukui, Seiichi Hayakawa, George P. Chrousos, Athanasios Michos, Elizabeth‐Barbara Tatsi, Filippos Filippatos, Agustí Rodríguez‐Palmero, Jesús Troya, Imran Tipu, Isabelle Meyts, Lucie Roussel, Sisse Rye Ostrowski, Laire Schidlowski, Carolina Prando, Antônio Condino‐Neto, Nathalie Cheikh, Ahmed Aziz Bousfiha, Jalila El Bakkouri, Sergio Aguilera, Suzan A. AlKhater, Gülsüm Alkan, Riccardo Castagnoli, Cyril Cyrus, Şefika Elmas Bozdemir, Melike Emiroğlu, Belgi̇n Gülhan, Emine Hafize Erdeniz, Nevin Hatipoğlu, Gülsün Iclal Bayhan, Petr Jabandžiev, Saliha Kanık Yüksek, Adem Karbuz, Şadiye Kübra Tüter Öz, Gian Luigi Marseglia, Özge Metin Akcan, Ahmet Osman Kılıç, Aslınur Özkaya Parlakay, Maria Papadaki, Kateřina Slabá, Esra Şevketoğlu, Juan Valencia-Ramos, Aysun Yahşi, Antonio Antela López, Gema Barbeito Castiñeiras, Xabier Bello Paderne, Mirian Ben García, María Victoria Carral García, Miriam Cebey‐López, Amparo Coira, M. Pájaro, José Javier Costa Alcalde, María José Currás Tuala, Ana Isabel Dacosta Urbieta, Blanca Díaz Esteban, María Jesús Domínguez Santalla, Juan Fernández Villaverde, Cristóbal Galbán Rodríguez, José Luis García Allut, Luisa García Vicente, Elena Giráldez Vázquez, Alberto Gómez‐Carballa, José Gómez Rial, Francisco Javier González‐Barcala, Beatriz Guerra Liñares, Pilar Leboráns Iglesias, Beatriz Lence Massa, Marta Lendoiro Fuentes, Montserrat López Franco, Ana López Lago, Federico Martinón‐Torres, Antonio Salas, Daniel Navarro De la Cruz, Eloína Núñez Masid, Juan Bautista Ortolá Devesa, Jacobo Pardo‐Seco, María Pazo Núñez, Marisa Pérez del Molino Bernal, Hugo Pérez Freixo, Lidia Piñeiro Rodríguez, Sara Pischedda, Manuel Portela‐Romero, Antonio Pose Reino, Gloria María Prada Hervella, Teresa Queiro Verdes, Lorenzo Redondo-Collazo, Patricia Regueiro Casuso, Susana Rey García, Sara Rey Vázquez, Vanessa Riveiro Blanco, Irene Rivero‐Calle, Carmen Rivero Velasco, Nuria Núñez, Eva Saborido Paz, José Miguel Sadiki Orayyou, Carla Saito Villanueva, Sonia Serén Fernández, Pablo Souto Sanmartín, Rocío Trastoy, M. Castellano, Pablo Varela García, María Soledad Vilas Iglesias, Sandra Viz-Lasheras, Rocío Ferreiro‐Iglesias, Iria Bastón‐Rey, Cristina Suárez, Alessandro Aiuti, Saleh Al‐Muhsen, Fahd Al‐Mulla, Ali Amara, Mark S. Anderson, Andrés A. Arias, Lisa M. Arkin, Hagit Baris Feldman, Catherine M. Biggs, Dusan Bogunovic, Alexandre Bolze, Анастасія Бондаренко, Yenan T. Bryceson, Manish J. Butte, Giorgio Casari, John Christodoulou, Aurélie Cobat, Roger Colobrán, Stefan N. Constantinescu, Megan A. Cooper, Clifton L. Dalgard, Murkesh Desai, Beth A. Drolet, Xavier Duval, Jamila El Baghdadi, Philippine Eloy, Sara Elva Espinosa‐Padilla, Jacques Fellay, Carlos Flores, José Luis Franco, Antoine Froidure, Guy Gorochov, Peter K. Gregersen, Bodo Grimbacher, David Hagin, Rabih Halwani, James R. Heath, Elena W.Y. Hsieh, Eystein S. Husebye, Kohsuke Imai, Yuval Itan, Erich D. Jarvis, Emmanuelle Jouanguy, Elżbieta Kaja, Timokratis Karamitros, Cheng‐Lung Ku, YL Lau, Yun Ling, C. Lucas, Davood Mansouri, László Maródi, France Mentré, Joshua D. Milner, Kristina Mironska, Trine H. Mogensen, Lisa F. P. Ng, Luigi D. Notarangelo, Antonio Novelli, Giuseppe Novelli, Cliona O’Farrelly, Satoshi Okada, Keisuke Okamoto, Jean W. Pape, Rebeca Pérez de Diego, Jordi Pérez‐Tur, David S. Perlin, Graziano Pesole, Anna M. Planas, Anne Puel, Lluís Quintana‐Murci, Sathishkumar Ramaswamy, Laurent Rénia, Igor Resnick, Carlos Rodríguez‐Gallego, Vanessa Sancho‐Shimizu, Anna Šedivá, Mikko Seppänen, Mohammed Shahrooei, Anna Shcherbina, Ondřej Slabý, Andrew L. Snow, Pere Soler‐Palacín, Vassili Soumelis, András N. Spaan, Helen C. Su, Stuart G. Tangye, Ahmad Abou Tayoun, Şehime Gülsün Temel, Christian Thorball, Pierre Tiberghien, Sophie Trouillet‐Assant, Stuart E. Turvey, K. M. Furkan Uddin, Mohammed Uddin, Diederik van de Beek, Donald C. Vinh, Horst von Bernuth, Joost Wauters, Mayana Zatz, Paweł Zawadzki, Qian Zhang, Shen‐Ying Zhang, Pärt Peterson, Romain Lévy, Pierre Quartier, Bertrand Boisson, Vivien Béziat, A. Borghesi, Andrea Pession, Nico Marr, Alexios‐Fotios A. Mentis, Vallo Tillmann, Bénédicte Neven, Luis Ignacio González‐Granado

Bibliographic record

VenueThe Journal of Experimental Medicine · 2024
Typearticle
Languageen
FieldMedicine
TopicCOVID-19 Clinical Research Studies
Canadian institutionsMcGill University Health Centre
FundersVlaamse regeringStavros Niarchos FoundationFonds Wetenschappelijk OnderzoekFondation pour la Recherche MédicaleFondation du SouffleInstitut National de la Santé et de la Recherche MédicaleEuropean CommissionJapan Society for the Promotion of ScienceNovo Nordisk FondenInstitut des maladies génétiques ImagineMinistère de l'Enseignement supérieur, de la Recherche et de l'InnovationKU LeuvenSt. Giles FoundationNational Institutes of HealthFisher Center for Alzheimer's Research FoundationMinistry of Education, Culture, Sports, Science and TechnologyNational Center for Advancing Translational SciencesAgence Nationale de la RechercheNational Institute of Allergy and Infectious DiseasesHoward Hughes Medical Institute
KeywordsNeutralizing antibodyMedicinePneumoniaCoronavirus disease 2019 (COVID-19)ImmunologyOdds ratioInterferonAntibodyAutoantibodySevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)VirologyInternal medicineGastroenterology

Abstract

fetched live from OpenAlex

We found that 19 (10.4%) of 183 unvaccinated children hospitalized for COVID-19 pneumonia had autoantibodies (auto-Abs) neutralizing type I IFNs (IFN-α2 in 10 patients: IFN-α2 only in three, IFN-α2 plus IFN-ω in five, and IFN-α2, IFN-ω plus IFN-β in two; IFN-ω only in nine patients). Seven children (3.8%) had Abs neutralizing at least 10 ng/ml of one IFN, whereas the other 12 (6.6%) had Abs neutralizing only 100 pg/ml. The auto-Abs neutralized both unglycosylated and glycosylated IFNs. We also detected auto-Abs neutralizing 100 pg/ml IFN-α2 in 4 of 2,267 uninfected children (0.2%) and auto-Abs neutralizing IFN-ω in 45 children (2%). The odds ratios (ORs) for life-threatening COVID-19 pneumonia were, therefore, higher for auto-Abs neutralizing IFN-α2 only (OR [95% CI] = 67.6 [5.7-9,196.6]) than for auto-Abs neutralizing IFN-ω only (OR [95% CI] = 2.6 [1.2-5.3]). ORs were also higher for auto-Abs neutralizing high concentrations (OR [95% CI] = 12.9 [4.6-35.9]) than for those neutralizing low concentrations (OR [95% CI] = 5.5 [3.1-9.6]) of IFN-ω and/or IFN-α2.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.036
GPT teacher head0.407
Teacher spread0.371 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations39
Published2024
Admission routes1
Has abstractyes

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