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Record W4390842479 · doi:10.1093/gigascience/giad114

Open Data Governance at the Canadian Open Neuroscience Platform (CONP): From the Walled Garden to the Arboretum

2024· article· en· W4390842479 on OpenAlexafffundabout
Alexander Bernier, Bartha Maria Knoppers, Patrick Bermudez, Michael J. S. Beauvais, Adrian Thorogood, Brendan Behan, Pierre Bellec, Shawn T. Brown, David Bujold, Ann Cavoukian, P. John Clarkson, Samir Das, Emilie Dessureault, Moyez Dharsee, Erin W. Dickie, Simon Duchesne, Stephanie O. M. Dyke, Kenneth Evans, Alan C. Evans, Jennifer Flynn, Nils D. Forkert, Tom Gee, Tristan Glatard, E. Richard Gold, Rachel Harding, Felipe Henriques, Sean Hill, Judy Illes, Jason Karamchandani, Ali R. Khan, Greg Kiar, Xavier Lecours, Mélanie Legault, D.R. MacFarlane, Cécile Madjar, Roland Nadler, Santiago Paiva, Paul Pavlidis, Jean‐Baptiste Poline, David Rotenberg, Marc-Étienne Rousseau, Walter A. Stewart, Nikola Stikov, Elizabeth Theriault

Bibliographic record

VenueGigaScience · 2024
Typearticle
Languageen
FieldComputer Science
TopicResearch Data Management Practices
Canadian institutionsMcGill University and Génome Québec Innovation CentreMcGill University Health CentreTerry Fox Research InstituteUniversity of TorontoMontreal Neurological Institute and HospitalMcGill University
FundersFondation Brain Canada
KeywordsOpen scienceOpen dataCitizen scienceData scienceWorld Wide WebComputer scienceNeuroscienceBiologyBotanyPhysics

Abstract

fetched live from OpenAlex

Scientific research communities pursue dual imperatives in implementing strategies to share their data. These communities attempt to maximize the accessibility of biomedical data for downstream research use, in furtherance of open science objectives. Simultaneously, such communities safeguard the interests of research participants through data stewardship measures and the integration of suitable risk disclosures to the informed consent process. The Canadian Open Neuroscience Platform (CONP) convened an Ethics and Governance Committee composed of experts in bioethics, neuroethics, and law to develop holistic policy tools, organizational approaches, and technological supports to align the open governance of data with ethical and legal norms. The CONP has adopted novel platform governance methods that favor full data openness, legitimated through the use of robust deidentification processes and informed consent practices. The experience of the CONP is articulated as a potential template for other open science efforts to further build upon. This experience highlights informed consent guidance, deidentification practices, ethicolegal metadata, platform-level norms, and commercialization and publication policies as the principal pillars of a practicable approach to the governance of open data. The governance approach adopted by the CONP stands as a viable model for the broader neuroscience and open science communities to adopt for sharing data in full open access.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Direct model labels (unvalidated)

Per-model category and study-design labels from the labeling rounds. They are machine output, unvalidated, and the disagreement between models ships as data. No study design here is MEDLINE-validated yet.

Model armCategoriesStudy designConfidence
gemmaOpen scienceScholarly communication
Domain: not available · Genre: Empirical
About the Canadian research system: yes · About a Canadian topic: yes
Not applicablemedium
gptOpen science
Domain: not available · Genre: Empirical
About the Canadian research system: no · About a Canadian topic: no
Other designlow
models splitAgreement compares identical category sets and study designs across arms.

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.040
metaresearch head score (Gemma)0.051
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch, Open science
Consensus categoriesnone
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Qualitative · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.996
Threshold uncertainty score0.554

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0400.051
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0030.006
Science and technology studies0.0300.029
Scholarly communication0.0220.013
Open science0.0040.021
Research integrity0.0040.007
Insufficient payload (model declined to judge)0.0090.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.276
GPT teacher head0.406
Teacher spread0.130 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Labeled directly by 2 models reading the full record.

Open scienceScholarly communication

The models disagree on parts of this classification; every voice is preserved in the section at the end of the page.

Study designNot applicable · Other design
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2024
Admission routes3
Has abstractyes

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