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Record W4390950175 · doi:10.1002/path.6238

Image‐based multiplex immune profiling of cancer tissues: translational implications. A report of the International Immuno‐oncology Biomarker Working Group on Breast Cancer

2024· review· en· W4390950175 on OpenAlexaff
Chowdhury Arif Jahangir, David B. Page, Glenn Broeckx, Claudia Aura Gonzalez, Caoimbhe Burke, Clodagh Murphy, Jorge S. Reis‐Filho, Amy Ly, Paul W. Harms, Rajarsi Gupta, Michael Vieth, Akira I. Hida, Mohamed M. Kahila, Zuzana Kos, P. J. van Diest, Sara Verbandt, Jeppe Thagaard, Reena Khiroya, Khalid AbdulJabbar, Gabriela Acosta Haab, Balázs Ács, Sylvia Adams, Jonas S. Almeida, Isabel Alvarado‐Cabrero, Farid Azmoudeh Ardalan, Sunil Badve, Nurkhairul Bariyah Baharun, Enrique Bellolio, Vydehi Bheemaraju, Kim RM Blenman, Luciana Botinelly Mendonça Fujimoto, Octavio Burgues, Alexandros Hardas, Maggie C.U. Cheang, Francesco Ciompi, Lee Cooper, An Coosemans, Germán Corredor, Flávio Luis Dantas Portela, Frederik Deman, Sandra Demaria, Sarah Dudgeon, Mahmoud Elghazawy, Claudio Fernandez‐Martín, Susan Fineberg, Stephen B. Fox, Jennifer M. Giltnane, Sacha Gnjatic, Paula I. González-Ericsson, Anita Grigoriadis, Niels Halama, Matthew G Hanna, Aparna Harbhajanka, Steven N. Hart, Johan Hartman, Stephen M. Hewitt, Hugo M. Horlings, Zaheed Husain, Sheeba Irshad, Emiel A. M. Janssen, Tatsuki R. Kataoka, Kosuke Kawaguchi, Andrey Khramtsov, Umay Kiraz, Pawan Kirtani, Liudmila L. Kodach, Konstanty Korski, Güray Aktürk, Ely Scott, Anikó Kovács, Anne‐Vibeke Lænkholm, Corinna Lang‐Schwarz, Denis Larsimont, Jochen K. Lennerz, Marvin Lerousseau, Xiaoxian Li, Anant Madabhushi, Sai Maley, Vidya Manur Narasimhamurthy, Douglas K. Marks, Elizabeth S. McDonald, Ravi Mehrotra, Stefan Michiels, Kharidehal Durga, Fayyaz Minhas, Shachi Mittal, David Moore, Shamim Mushtaq, Nighat Hussain, Thomas Papathomas, Frédérique Penault‐Llorca, Rashindrie Perera, Christopher J. Pinard, Juan Carlos Pinto‐Cardenas, Giancarlo Pruneri, Lajos Pusztai, Nasir Rajpoot, Bernardo L. Rapoport, Tilman T. Rau, Joana Ribeiro, David L. Rimm, Anne Vincent‐Salomon, Joel Saltz, Shahin Sayed, Evangelos Hytopoulos, Sarah Mahon, Kalliopi P. Siziopikou, Christos Sotiriou, Albrecht Stenzinger, Maher A. Sughayer, Daniel Sur, Fraser Symmans, Sunao Tanaka, Timothy Taxter, Sabine Tejpar, Jonas Teuwen, E. Aubrey Thompson, Trine Tramm, Jeroen van der Laak, Gregory Verghese, Giuseppe Viale, Noorul Wahab, Thomas Walter, Yannick Waumans, Hannah Y. Wen, Wentao Yang, Yinyin Yuan, John M.S. Bartlett, Sibylle Loibl, Carsten Denkert, Peter Savas, Sherene Loi, Elisabeth Specht Stovgaard, Roberto Salgado, William M. Gallagher, Arman Rahman

Bibliographic record

VenueThe Journal of Pathology · 2024
Typereview
Languageen
FieldMedicine
TopicCancer Immunotherapy and Biomarkers
Canadian institutionsUniversity of TorontoUniversity of British ColumbiaUniversity of GuelphSunnybrook Health Science CentreHealth Sciences CentreBC Cancer Agency
FundersNational Institute of Biomedical Imaging and BioengineeringNational Cancer InstituteServierIncyteMedical Research CouncilChugai PharmaceuticalNational Institutes of HealthPeter MacCallum Cancer CentreLigue Contre le CancerKU LeuvenDOD Prostate Cancer Research ProgramJapan Society for the Promotion of ScienceAstellas PharmaEisaiFondation ARC pour la Recherche sur le CancerDOD Peer Reviewed Cancer Research ProgramMinisterie van Volksgezondheid, Welzijn en SportDaiichi-SankyoAgence Nationale de la RechercheAmgenScience Foundation IrelandAstraZenecaGenentechEuropean CommissionEngineering and Physical Sciences Research CouncilYuhanIrish Cancer SocietyNational Breast Cancer FoundationSvenska Sällskapet för Medicinsk ForskningKWF KankerbestrijdingU.S. Department of DefenseCancer Research UKSeagenPuma BiotechnologyDaiichi Sankyo EuropeVeracytePfizerSusan G. KomenNational Institute of Diabetes and Digestive and Kidney DiseasesCarrick TherapeuticsGilead SciencesGlaxoSmithKlineSanofiCalifornia Breast Cancer Research ProgramNational Health and Medical Research CouncilCancer Research InstituteEli Lilly and CompanyBristol-Myers SquibbBreast Cancer Research FoundationHigher Education AuthoritySilverback TherapeuticsU.S. Department of Veterans AffairsIrish Research eLibrary
KeywordsMultiplexBreast cancerBiomarkerOncologyMedicineProfiling (computer programming)Internal medicineImmune systemCancerPathologyBioinformaticsImmunologyBiologyGeneticsComputer science

Abstract

fetched live from OpenAlex

Recent advances in the field of immuno-oncology have brought transformative changes in the management of cancer patients. The immune profile of tumours has been found to have key value in predicting disease prognosis and treatment response in various cancers. Multiplex immunohistochemistry and immunofluorescence have emerged as potent tools for the simultaneous detection of multiple protein biomarkers in a single tissue section, thereby expanding opportunities for molecular and immune profiling while preserving tissue samples. By establishing the phenotype of individual tumour cells when distributed within a mixed cell population, the identification of clinically relevant biomarkers with high-throughput multiplex immunophenotyping of tumour samples has great potential to guide appropriate treatment choices. Moreover, the emergence of novel multi-marker imaging approaches can now provide unprecedented insights into the tumour microenvironment, including the potential interplay between various cell types. However, there are significant challenges to widespread integration of these technologies in daily research and clinical practice. This review addresses the challenges and potential solutions within a structured framework of action from a regulatory and clinical trial perspective. New developments within the field of immunophenotyping using multiplexed tissue imaging platforms and associated digital pathology are also described, with a specific focus on translational implications across different subtypes of cancer. © 2024 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Other design · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.933
Threshold uncertainty score0.660

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.077
GPT teacher head0.419
Teacher spread0.342 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designOther design
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations16
Published2024
Admission routes1
Has abstractyes

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