MétaCan
Menu
Back to cohort
Record W4390977381 · doi:10.1152/ajprenal.00347.2023

Guidelines on antibody use in physiology research

2024· article· en· W4390977381 on OpenAlexafffund
Heddwen L. Brooks, Lisandra E. de Castro Brás, Keith R. Brunt, Megan A. Sylvester, Michelle S. Parvatiyar, Padmini Sirish, Shyam S. Bansal, Rasheed Sule, Ashley L. Eadie, Mark A. Knepper, Robert A. Fenton, Merry L. Lindsey, Kristine Y. DeLeon‐Pennell, Aldrin V. Gomes

Bibliographic record

VenueAmerican Journal of Physiology-Renal Physiology · 2024
Typearticle
Languageen
FieldEngineering
TopicMicrofluidic and Bio-sensing Technologies
Canadian institutionsSaint John Regional HospitalDalhousie University
FundersNational Heart, Lung, and Blood InstituteGovernment of CanadaNovo Nordisk FondenNational Institute of General Medical SciencesAmerican Heart AssociationNational Institute of Environmental Health SciencesCanadian Institutes of Health ResearchU.S. Department of Veterans Affairs
KeywordsGuidelineComputer scienceData sciencePhysiologyMedicinePathology

Abstract

fetched live from OpenAlex

Antibodies are one of the most used reagents in scientific laboratories and are critical components for a multitude of experiments in physiology research. Over the past decade, concerns about many biological methods, including those that use antibodies, have arisen as several laboratories were unable to reproduce the scientific data obtained in other laboratories. The lack of reproducibility could be largely attributed to inadequate reporting of detailed methods, no or limited verification by authors, and the production and use of unvalidated antibodies. The goal of this guideline article is to review best practices concerning commonly used techniques involving antibodies, including immunoblotting, immunohistochemistry, and flow cytometry. Awareness and integration of best practices will increase the rigor and reproducibility of these techniques and elevate the quality of physiology research.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.024
metaresearch head score (Gemma)0.036
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.976
Threshold uncertainty score0.127

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0240.036
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0050.003
Science and technology studies0.0010.002
Scholarly communication0.0030.003
Open science0.0060.002
Research integrity0.0080.006
Insufficient payload (model declined to judge)0.0150.017

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.063
GPT teacher head0.363
Teacher spread0.300 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainMethods
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations15
Published2024
Admission routes2
Has abstractyes

Explore more

Same venueAmerican Journal of Physiology-Renal PhysiologySame topicMicrofluidic and Bio-sensing TechnologiesFrench-language works237,207