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Record W4391188066 · doi:10.1101/2024.01.23.576882

Zebrafish eye development and function is affected by crude oil exposure – line of evidence from underlying molecular effects to behavioral consequences

2024· preprint· en· W4391188066 on OpenAlexaff
Leonie Mueller, Sarah Johann, Bernd Denecke, Ali T. Abdallah, Markus Hecker, Henner Hollert, Thomas‐Benjamin Seiler

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRetinal Development and Disorders
Canadian institutionsUniversity of Saskatchewan
FundersRWTH Aachen UniversityEuropean Commission
KeywordsZebrafishDanioEmbryoBiologyToxicityTranscriptomeHistologyRetinaEmbryogenesisCell biologyAndrologyToxicologyPhysiologyZoologyAnatomyGeneGeneticsGene expressionNeuroscienceInternal medicineMedicine

Abstract

fetched live from OpenAlex

Abstract Crude oil can affect the normal eye development and swimming behavior of fish embryos. In this study 0-4 hours post fertilization (hpf) zebrafish ( Danio rerio ) embryos were exposed to low, sublethal concentrations of water-accommodated fractions (WAF) of a naphthenic North Sea crude oil alone and in combination with a third-generation chemical dispersant. Effects on eye development and function at the transcript, histological, morphological, and behavioral level were assessed relative to untreated control specimen at 119 hpf. Exposed embryos swam significantly less during the dark phases of the light/dark transition test. Eye size of zebrafish embryos was significantly smaller in groups exposed to crude oil WAFs. Zebrafish retina histology revealed that, among other structural alterations, the outer nuclear layer, containing photoreceptor cells relevant for normal visual functioning, was significantly thinner in exposed embryos. Transcriptome analysis revealed that several genes involved in eye development and function (opsins and crystallins) were dysregulated upon oil exposure. The molecular effects on gene expression and eye histology results form a novel line of evidence that explains the observed effects of crude oil on the swimming activity of exposed fish embryos. The present study is in line with recent findings highlighting the importance of ocular toxicity in developing embryos exposed to petroleum samples at environmentally relevant and non-lethal concentrations without visible malformations. The study suggests that oculotoxicity should be considered as a major toxicity pathway alongside to the well-established cardiotoxicity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.026
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.025
GPT teacher head0.266
Teacher spread0.240 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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