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Record W4391250270 · doi:10.21203/rs.3.rs-3897886/v1

Apolipoprotein-A1 transports and regulates MMP2 in the blood

2024· preprint· en· W4391250270 on OpenAlexafffund
Hassan Sarker, Rashmi Panigrahi, Ana Lopez-Campistrous, Todd McMuellen, Ken Reyes, Elena Anderson, Vidhya Krishnan, Samuel Hernandez‐Anzaldo, J. N. Mark Glover, Eugenio Hardy, Carlos Fernández-Patrón

Bibliographic record

VenueResearch Square · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicProtease and Inhibitor Mechanisms
Canadian institutionsUniversity of Alberta
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsApolipoprotein BBusinessInternal medicineMedicineCholesterol

Abstract

fetched live from OpenAlex

Abstract Synthesized in the liver and intestines, apolipoprotein A1 (ApoA1) is the major protein component of high-density lipoprotein (HDL) particles and transports cholesterol from peripheral organs to the liver. This interorgan communication strategy may protect against atherogenesis by sequestering cholesterol from atherosclerotic lesions. Here, we found that ApoA1 has high affinity for the catalytic groove and fibronectin-like repeats of matrix metalloproteinase 2 (MMP2), the most abundant MMP in human blood. In healthy humans and ApoA1-expressing mice, we found that MMP2 is associated with ApoA1 in HDL. We confirmed the ApoA1/MMP2 interactions using five orthogonal interaction proteomics assays. Strikingly, we found that Apoa1 can allosterically increase the proteolytic activity of MMP2—an effect not observed in ApoA1-deficient plasma from ApoA1 KO mice. This finding was not predictable, as MMP2 was not previously known to be an allosteric enzyme. Using a high-confidence artificial intelligence (AlfaFold)-based structural model of the ApoA1/MMP2 complex, we explain how ApoA1 binds and allosterically regulates MMP2. We suggest that ApoA1 sequesters MMP2 in the blood circulation and redistributes it to ApoA1 target organs, such as the liver. This interorgan communication mechanism is independent of canonical reverse cholesterol transport by ApoA1/HDL and may prevent MMP2-mediated rupture of atherosclerotic plaques. Graphical Abstract

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.047
Threshold uncertainty score0.157

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0470.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.338
Teacher spread0.311 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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