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Record W4391476405 · doi:10.1038/s41467-024-45246-7

Molecular-level architecture of Chlamydomonas reinhardtii’s glycoprotein-rich cell wall

2024· article· en· W4391476405 on OpenAlexafffund
Alexandre Poulhazan, Alexandre A. Arnold, Frédéric Mentink‐Vigier, Artur Muszyński, Parastoo Azadi, Adnan Halim, Sergey Y. Vakhrushev, Hiren J. Joshi, Tuo Wang, Dror E. Warschawski, Isabelle Marcotte

Bibliographic record

VenueNature Communications · 2024
Typearticle
Languageen
FieldEnergy
TopicAlgal biology and biofuel production
Canadian institutionsUniversité du Québec à Montréal
FundersDivision of Materials ResearchFonds de recherche du Québec – Nature et technologiesU.S. Department of Health and Human ServicesBasic Energy SciencesNatural Sciences and Engineering Research Council of CanadaOffice of ScienceCenters for Disease Control and PreventionNovo Nordisk FondenCentre National de la Recherche ScientifiqueNational Institute of General Medical SciencesHigh Magnetic Field Laboratory, Chinese Academy of SciencesNational High Magnetic Field LaboratoryNovo NordiskDanmarks GrundforskningsfondNational Research FoundationWind Energy Technologies OfficeGovernment of CanadaMizutani Foundation for GlycoscienceNational Science FoundationUniversität zu KölnWashington University in St. LouisNational Institutes of HealthU.S. Department of EnergyVillum Fonden
KeywordsChlamydomonas reinhardtiiCell wallGlycanChlamydomonasCelluloseBiophysicsChemistryPolysaccharideGlycoproteinBiochemistryNanotechnologyBiologyMaterials scienceGene

Abstract

fetched live from OpenAlex

Microalgae are a renewable and promising biomass for large-scale biofuel, food and nutrient production. However, their efficient exploitation depends on our knowledge of the cell wall composition and organization as it can limit access to high-value molecules. Here we provide an atomic-level model of the non-crystalline and water-insoluble glycoprotein-rich cell wall of Chlamydomonas reinhardtii. Using in situ solid-state and sensitivity-enhanced nuclear magnetic resonance, we reveal unprecedented details on the protein and carbohydrate composition and their nanoscale heterogeneity, as well as the presence of spatially segregated protein- and glycan-rich regions with different dynamics and hydration levels. We show that mannose-rich lower-molecular-weight proteins likely contribute to the cell wall cohesion by binding to high-molecular weight protein components, and that water provides plasticity to the cell-wall architecture. The structural insight exemplifies strategies used by nature to form cell walls devoid of cellulose or other glycan polymers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.013
Threshold uncertainty score0.025

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.274
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations34
Published2024
Admission routes2
Has abstractyes

Explore more

Same venueNature CommunicationsSame topicAlgal biology and biofuel productionFrench-language works237,207