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Record W4391577343 · doi:10.1148/radiol.231319

The Image Biomarker Standardization Initiative: Standardized Convolutional Filters for Reproducible Radiomics and Enhanced Clinical Insights

2024· review· en· W4391577343 on OpenAlexfundno aff
P. Whybra, Alex Zwanenburg, Vincent Andrearczyk, Roger Schaer, Aditya Apte, Alexandre Ayotte, Bhakti Baheti, Spyridon Bakas, Andrea Bettinelli, Ronald Boellaard, Luca Boldrini, Irène Buvat, Gary Cook, Florian Dietsche, N. Dinapoli, Hubert S. Gabryś, Vicky Goh, Matthias Gückenberger, Mathieu Hatt, Mahdi Hosseinzadeh, Aditi Iyer, Jacopo Lenkowicz, Mahdi Ait Lhaj Loutfi, Steffen Löck, Francesca Marturano, Olivier Morin, Christophe Nioche, Fanny Orlhac, Sarthak Pati, Arman Rahmim, Seyed Masoud Rezaeijo, Christopher G Rookyard, Mohammad R. Salmanpour, Andreas Schindele, Isaac Shiri, Emiliano Spezi, Stephanie Tanadini‐Lang, Florent Tixier, Taman Upadhaya, Vincenzo Valentini, Joost J. M. van Griethuysen, Fereshteh Yousefirizi, Habib Zaidi, Henning Müller, Martin Vallières, Adrien Depeursinge

Bibliographic record

VenueRadiology · 2024
Typereview
Languageen
FieldMedicine
TopicRadiomics and Machine Learning in Medical Imaging
Canadian institutionsnot available
FundersNational Cancer InstituteCentre For Medical Engineering, King’s College LondonUK Research and InnovationEngineering and Physical Sciences Research CouncilNatural Sciences and Engineering Research Council of CanadaSchweizerischer Nationalfonds zur Förderung der Wissenschaftlichen ForschungWellcome TrustCancer Research UKCanadian Institute for Advanced ResearchNational Science FoundationWellcomeKing's College London
KeywordsReproducibilityIntraclass correlationMedicineArtificial intelligenceFeature (linguistics)Filter (signal processing)Pattern recognition (psychology)StandardizationComputer scienceNuclear medicineComputer visionMathematicsStatistics

Abstract

fetched live from OpenAlex

Filters are commonly used to enhance specific structures and patterns in images, such as vessels or peritumoral regions, to enable clinical insights beyond the visible image using radiomics. However, their lack of standardization restricts reproducibility and clinical translation of radiomics decision support tools. In this special report, teams of researchers who developed radiomics software participated in a three-phase study (September 2020 to December 2022) to establish a standardized set of filters. The first two phases focused on finding reference filtered images and reference feature values for commonly used convolutional filters: mean, Laplacian of Gaussian, Laws and Gabor kernels, separable and nonseparable wavelets (including decomposed forms), and Riesz transformations. In the first phase, 15 teams used digital phantoms to establish 33 reference filtered images of 36 filter configurations. In phase 2, 11 teams used a chest CT image to derive reference values for 323 of 396 features computed from filtered images using 22 filter and image processing configurations. Reference filtered images and feature values for Riesz transformations were not established. Reproducibility of standardized convolutional filters was validated on a public data set of multimodal imaging (CT, fluorodeoxyglucose PET, and T1-weighted MRI) in 51 patients with soft-tissue sarcoma. At validation, reproducibility of 486 features computed from filtered images using nine configurations × three imaging modalities was assessed using the lower bounds of 95% CIs of intraclass correlation coefficients. Out of 486 features, 458 were found to be reproducible across nine teams with lower bounds of 95% CIs of intraclass correlation coefficients greater than 0.75. In conclusion, eight filter types were standardized with reference filtered images and reference feature values for verifying and calibrating radiomics software packages. A web-based tool is available for compliance checking.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.050
metaresearch head score (Gemma)0.062
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Reproducibility · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: none
Teacher disagreement score0.950
Threshold uncertainty score0.267

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0500.062
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0040.002
Science and technology studies0.0010.002
Scholarly communication0.0030.003
Open science0.0040.004
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.069
GPT teacher head0.440
Teacher spread0.371 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designNot applicable
DomainReproducibility
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations216
Published2024
Admission routes1
Has abstractyes

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