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Cutinase Immobilization on a Supramolecular Cage Protein Scaffold

2024· article· en· W4391604300 on OpenAlexafffund
Jameson M. M. Pfeffer, Fatima Merza, Maja Lopandic, John F. Honek

Bibliographic record

VenueCurrent Nanomaterials · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced Biosensing Techniques and Applications
Canadian institutionsUniversity of Waterloo
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsCageSupramolecular chemistryScaffoldCutinaseScaffold proteinChemistryNanotechnologyBiophysicsMaterials scienceBiochemistryCrystallographyBiologyBiomedical engineeringEngineeringCrystal structureEnzymeSignal transductionStructural engineering

Abstract

fetched live from OpenAlex

Background: Self-assembly of preformed nanoparticles into larger and more complex materials, termed nanoarchitectonics, is an area of great interest as the resulting higher-order archi-tectures can exhibit advanced supramolecular properties important in sensor design, catalysis, and ferromagnetic properties. Objective: The aim of the current investigation is to explore the application of self-assembling pro-tein networks to serve as molecular scaffolds for immobilization of enzyme catalysts. The use of 12 nm ferritin cage proteins to serve as components of these scaffolds would expand the application of these types of multifunctional proteins to the fabrication of advanced biomaterials. Method: Humicola insolens cutinase was immobilized on a supramolecular protein scaffold using bioconjugation to biotinylate the enzyme of interest. The protein-based scaffold consisted of a fer-ritin-biotin-avidin system, and the interaction of biotin and avidin was used to suspend the enzyme molecules onto this network. Matrix-assisted laser desorption mass spectrometry, scanning electron microscopy, and energy dispersive X-ray spectroscopy were employed to analyze the supramolec-ular cage protein scaffold at various stages of fabrication. Results: The activities of these scaffold-bound enzymes towards chromogenic esters and polyeth-ylene terephthalate (PET) were analyzed and found to remain active towards both substrates follow-ing biotinylation and immobilization. Conclusion: Biotinylated Humicola insolens cutinase enzymes can be immobilized on nanodimen-sional protein networks composed of avidin and biotinylated horse spleen ferritin and exhibit cata-lytic activity toward a small substrate, p-nitrophenylbutyrate, as well as an industrial plastic. Self-assembling protein networks may provide new approaches for biomolecular immobilization.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.243
Threshold uncertainty score0.542

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.308
Teacher spread0.293 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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