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Record W4391708335 · doi:10.1101/2024.02.05.578945

The Guinea Pig: A New Model for Human Preimplantation Development

2024· preprint· en· W4391708335 on OpenAlexafffund
Jésica Canizo, Cheng Zhao, Sophie Petropoulos

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPluripotent Stem Cells Research
Canadian institutionsUniversité de MontréalCentre Hospitalier de l’Université de Montréal
FundersUniversité de MontréalVetenskapsrådetSvenska Sällskapet för Medicinsk Forskning
KeywordsBlastocystBiologyEmbryoEmbryogenesisInner cell massOffspringCell biologyComputational biologyGeneticsEvolutionary biologyPregnancy

Abstract

fetched live from OpenAlex

ABSTRACT Preimplantation development is an important window of human embryogenesis. During this time, the initial lineages are formed which largely govern embryo competence, implantation, and ultimately the developmental potential of the fetus. Ethical constraints and limitations surrounding human embryos research often necessitates the use of a model system. We now identify the guinea pig as a promising small animal model, which closely recapitulates early human embryogenesis in terms of the timing of compaction, early-, mid-, and late-blastocyst formation and implantation. We also observe conserved spatio-temporal expression of key lineage markers, roles of both Hippo and MEK-ERK signaling and an incomplete X-Chromosome inactivation. Further, our multi-species analysis highlights the spatio-temporal expression of conserved and divergent genes during preimplantation development. The guinea pig serves as an exciting new model which will enhance developmental and pluripotency research and can be leveraged to better understand the longer term impact of early exposures on offspring outcomes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.024

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0070.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.027
GPT teacher head0.274
Teacher spread0.247 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes2
Has abstractyes

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