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Record W4392272790

Integration of planktonic bacteria in the biofilm and functional analysis of the Bthur62720 gene in Bacillus thuringiensis

2021· preprint· en· W4392272790 on OpenAlexfundno aff
Nay El Khoury

Bibliographic record

VenueHAL (Le Centre pour la Communication Scientifique Directe) · 2021
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBacterial biofilms and quorum sensing
Canadian institutionsnot available
FundersCampus FranceAgence Universitaire de la Francophonie
KeywordsBacillus thuringiensisBiofilmBacteriaMicrobiologyBiologyGenetics
DOInot available

Abstract

fetched live from OpenAlex

Bacillus thuringiensis is able to produce a pellicle at the air-liquid interface in glass tubes under static conditions. During biofilm formation, two populations coexist: a sessile floating population and a planktonic population, located in the culture medium beneath the pellicle. Using spectrophotometric measurements, we followed the growth of both populations during the B. thuringiensis 407 pellicle formation. Our results show that while the biofilm biomass increases rapidly, the planktonic population growth drops sharply. This decrease is not observed with the 407 spoOA mutant or for strains unable to form a biofilm, and cannot be attributed to cell lysis or cell sedimentation. Therefore, it is the result of a massive integration of planktonic cells in the preformed pellicle. We also visualized, using epi-fluorescence microscopy, the integration of planktonic bacteria of the 407 strain in its preformed biofilm. The recruited cells are located in restricted areas of the biofilm, where the density of sessile cells is low, revealing a heterogeneous spatial distribution of the immigrant cells within the biofilm. To identify the mechanisms involved in the recruitment of planktonic cells in the biofilm, we screened a bank of mutants of the 407 strain, obtained by random mutagenesis, for their ability to integrate a pre-existing biofilm. One of the mutants in the library is strongly affected in its ability to integrate a biofilm. This deficiency is caused by the disruption of the Bthur62720 gene, which is carried by the BTB-9p plasmid and encodes a 21 kDa protein. This protein has no homolog and in silico analysis predict a signal peptide, a N-terminal domain of unknown function and a C-terminal membrane domain. Using immunocytochemistry and translational fusion assays with GFP, we showed that this protein is parietal, polar and that its N-terminal domain is cytoplasmic. With a specific dye of charged membrane phospholipids, 10-N-nonyl acridine orange, we showed that the deletion of Bthur002_62720 disorganizes the lipid rafts distribution, which appear essentially polar in wild type strain 407. Moreover, this deletion strongly affects linear swimming, but not bacterial tumbling or the presence of flagella. These results allow us to hypothesis that Bthur62720 stabilizes the lipid rafts located at the cell poles. The polar localization of these rafts, required for the clustering of chemoreceptors, would be necessary to ensure a normal chemotaxis function and thus, bacterial swimming.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.212
Teacher spread0.200 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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