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Record W4392293603 · doi:10.1101/2024.02.28.582602

<i>DVL1</i> variants and C-terminal deletions have differential effects on craniofacial development and WNT signaling

2024· preprint· en· W4392293603 on OpenAlexafffund
Shruti S. Tophkhane, Sarah J. Gignac, Katherine Fu, Esther M. Verheyen, Joy M. Richman

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicWnt/β-catenin signaling in development and cancer
Canadian institutionsSimon Fraser UniversityUniversity of British Columbia
FundersCanadian Institutes of Health Research
KeywordsWnt signaling pathwayTerminal (telecommunication)CraniofacialDifferential (mechanical device)GeneticsBiologyCell biologySignal transductionComputer scienceTelecommunicationsEngineering

Abstract

fetched live from OpenAlex

Abstract Robinow Syndrome (RS) is a rare disease characterized by craniofacial malformations and limb shortening linked with mutations in seven WNT pathway genes. Our objective was to investigate the functional effects of frameshift mutations the intracellular adaptor protein, Dishevelled ( DVL1 ; c.1519 Δ T , p.Trp507Glyfs*142) on chicken craniofacial development. Misexpression of wt (wt) or mutant h DVL1 variants in vivo caused upper beak shortening (wt DVL1 n=8/14; DVL1 1519 Δ T 12/13). At early stages of development, the DVL1 1519 Δ T inhibited frontonasal mass narrowing, chondrogenesis, and proliferation. To test whether the phenotypes were caused due to the abnormal C-terminal peptide in DVL1 1519 Δ T , we designed two additional constructs. The DVL1 1519* (DVL1 507* ) retains first 30 amino acids of the C-terminus while DVL1 1431* (DVL1 477* ) removes the entire C-terminus. DVL1 1519* injected embryos had normal beaks while DVL1 1431* caused high mortality and the phenotypes were like the DVL1 1519 Δ T . In frontonasal micromass cultures, both DVL1 1519 Δ T and DVL1 1431* inhibited skeletogenesis while the DVL1 1519* resembled wt DVL1 and GFP cultures. In luciferase assays DVL1 1519 Δ T , DVL1 1519* and DVL1 1431* weakly activated the WNT canonical and non-canonical JNK-PCP pathways compared to wt DVL1 . Furthermore, we observed that variant DVL1 507*fs is stalled in the nucleus similar to hDVL1 477* , possibly due to the abnormal C-terminus interfering with the nuclear export sequence. wtDVL1 and DVL1 507* were distributed in nucleus and the cytoplasm. Our RS- DVL1 1519ΔT avian model recapitulates the broad face and jaw hypoplasia and demonstrates defects in both branches of WNT signaling. This is the first study to clarify the role of abnormal C-terminus in ADRS and to recognize the importance of an uncharacterized C-terminal sequence. Summary Statement Functional and biochemical studies on chicken embryos with the Robinow syndrome (RS) DVL1 variant demonstrate defects in skeletogenesis and both branches of WNT signaling. This is the first study to establish a link between the RS facial defects and the mutated C-terminal sequence. We identified first 30 amino acids of the DVL1 C-terminus are sufficient for normal development.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.213
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2024
Admission routes2
Has abstractyes

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