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Record W4392580776 · doi:10.1002/cplu.202400084

Direct Conjugation of Gallium‐(III)‐Corroles to Short Interfering RNA(siRNA) Providing Real‐Time siRNA Imaging and Gene Silencing

2024· article· en· W4392580776 on OpenAlexafffund
Ifrodet Giorgees, Vanessa Affe, Islah Williams, Jean‐Paul Desaulniers

Bibliographic record

VenueChemPlusChem · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced biosensing and bioanalysis techniques
Canadian institutionsOntario Tech University
FundersNatural Sciences and Engineering Research Council of CanadaAgilent Technologies
KeywordsCorroleSmall interfering RNAGene knockdownGene silencingRNA interferenceTrans-acting siRNAChemistryBiophysicsMolecular biologyRNAGeneBiologyBiochemistryPhotochemistry

Abstract

fetched live from OpenAlex

Abstract Discovering new modifications for oligonucleotide therapeutics is essential for expanding its application to new targets and diseases. In this project, we focus on conjugating metaled ligands to short interfering RNAs (siRNAs) to investigate robust and simple conjugation methods for adding new properties such as real‐time imaging to the siRNA. Here we report the chemical synthesis of novel Ga‐(III)‐corroles for their direct conjugation to siRNAs. Ga‐(III)‐corrole‐siRNAs showed promising results when evaluated for gene silencing and live cell imaging. The knockdown activity of the firefly luciferase reporter gene was measured to evaluate gene silencing activity. Gene silencing studies from two 5’‐Ga‐(III)‐labeled‐siRNAs exhibited dose‐dependent knockdown with IC 50 s of 812.7 and 451.4 pM, which is comparable to wild‐type (IC 50 =439.7 pM) in the absence of red light, and IC 50 s of 562.9 and 354.5 pM, which is also comparable to wild‐type (IC 50 =337.4 pM), in the presence of red light. In addition, imaging studies with Ga‐(III)‐corrole‐modified siRNAs showed intense fluorescence in HeLa cells, highlighting that the Ga‐(III)‐corrole modification is an effective fluorophore for siRNA tracing and imaging. Moreover, the photodynamic activity of free base corrole vs the Ga‐(III)‐corrole was evaluated. Results show an increase of light cytotoxicity of the corrole ligand upon the addition of Ga‐(III); however, no phototoxicity was observed when Ga‐(III) ligands were linked to siRNA. In conclusion, Ga‐(III)‐corrole‐siRNAs show promising results for applications in simultaneous real‐time imaging and gene silencing.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.013
Threshold uncertainty score0.813

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.262
Teacher spread0.255 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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