MétaCan
Menu
Back to cohort
Record W4393017264 · doi:10.1002/gepi.22555

Breast and bowel cancers diagnosed in people ‘too young to have cancer’: A blueprint for research using family and twin studies

2024· article· en· W4393017264 on OpenAlexaff
John L. Hopper, Shuai Li, Robert J. MacInnis, James G. Dowty, Tuong L. Nguyen, Minh Bui, Gillian S. Dite, Vivienne F. C. Esser, Zhoufeng Ye, Enes Makalic, Daniel F. Schmidt, Benjamin Goudey, Karen Alpen, Miroslaw K. Kapuscinski, Aung Ko Win, Pierre‐Antoine Dugué, Roger L. Milne, Harindra Jayasekara, Jennifer D. Brooks, Sue Malta, Lucas Calais‐Ferreira, Alexander C. Campbell, Jesse T Young, Tú Nguyen‐Dumont, Joohon Sung, Graham G. Giles, Daniel D. Buchanan, Ingrid Winship, Mary Beth Terry, Melissa C. Southey, Mark A. Jenkins

Bibliographic record

VenueGenetic Epidemiology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBRCA gene mutations in cancer
Canadian institutionsCentre for Addiction and Mental HealthPublic Health OntarioUniversity of Toronto
FundersNational Health and Medical Research CouncilMedical Research CouncilSuicide Prevention AustraliaAustralian GovernmentNational Research Foundation of KoreaUniversity of MelbourneNational Research Foundation
KeywordsBreast cancerConfoundingIncidence (geometry)MedicineTwin studyDemographyColorectal cancerCancerOncologyHeritabilityInternal medicineBiologyGeneticsMathematics

Abstract

fetched live from OpenAlex

Young breast and bowel cancers (e.g., those diagnosed before age 40 or 50 years) have far greater morbidity and mortality in terms of years of life lost, and are increasing in incidence, but have been less studied. For breast and bowel cancers, the familial relative risks, and therefore the familial variances in age-specific log(incidence), are much greater at younger ages, but little of these familial variances has been explained. Studies of families and twins can address questions not easily answered by studies of unrelated individuals alone. We describe existing and emerging family and twin data that can provide special opportunities for discovery. We present designs and statistical analyses, including novel ideas such as the VALID (Variance in Age-specific Log Incidence Decomposition) model for causes of variation in risk, the DEPTH (DEPendency of association on the number of Top Hits) and other approaches to analyse genome-wide association study data, and the within-pair, ICE FALCON (Inference about Causation from Examining FAmiliaL CONfounding) and ICE CRISTAL (Inference about Causation from Examining Changes in Regression coefficients and Innovative STatistical AnaLysis) approaches to causation and familial confounding. Example applications to breast and colorectal cancer are presented. Motivated by the availability of the resources of the Breast and Colon Cancer Family Registries, we also present some ideas for future studies that could be applied to, and compared with, cancers diagnosed at older ages and address the challenges posed by young breast and bowel cancers.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.312
Threshold uncertainty score0.741

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.150
GPT teacher head0.468
Teacher spread0.319 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueGenetic EpidemiologySame topicBRCA gene mutations in cancerFrench-language works237,207