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Record W4393120764 · doi:10.1093/jrsssb/qkae023

Interpretable discriminant analysis for functional data supported on random nonlinear domains with an application to Alzheimer’s disease

2024· article· en· W4393120764 on OpenAlexfundno aff
Eardi Lila, Wenbo Zhang, Swati Rane Levendovszky, William J. Jagust, Laurel Beckett, Robert C. Green, Richard J. Perrin, Leslie M. Shaw, Zaven S. Khachaturian, Marı́a C. Carrillo, William Z. Potter, Lisa L. Barnes, Marie Bernard, Carole Ho, Jonathan Jackson, Eliezer Masliah, Donna Masterman, Ozioma C. Okonkwo, Laurie Ryan, Nina Silverberg, Adam Fleisher, Michael W. Weiner, Juliet Fockler, Dallas P. Veitch, John Neuhaus, Chengshi Jin, Rachel L. Nosheny, Miriam T. Ashford, Derek Flenniken, Adrienne Kormos, Tom Montine, Ronald Petersen, Paul Aisen, Michael S. Rafii, Devon Gessert, Jennifer Salazar, Yuliana Cabrera, Sarah Walter, Garrett Miller, Godfrey Coker, Taylor Clanton, Stephanie Smith, Payam Mahboubi, Shelley Moore, Jeremy Pizzola, Elizabeth Shaffer, Brittany Sloan, Clifford R. Jack, Arvin Forghanian-Arani, Christopher G. Schwarz, David T. Jones, Jeff Gunter, Kejal Kantarci, Matthew L. Senjem, Prashanthi Vemuri, Robert I. Reid, Nick C. Fox, Ian B. Malone, Paul M. Thompson, Sophia I. Thomopoulos, Talia M. Nir, Neda Jahanshad, Alexander Knaack, Evan Fletcher, Danielle Harvey, Duygu Tosun, Stephanie Rossi Chen, Mark Choe, Paul A. Yushkevich, Sandhitsu R. Das, Eric M. Reiman, Nigel J. Cairns, Erin Householder, Erin Franklin, Haley Bernhardt, Lisa Taylor‐Reinwald, John Q. Trojanowki, Magdalena Korecka, Michal Figurski, Arthur W. Toga, Scott Neu, Shannon L. Risacher, Liana G. Apostolova, Li Shen, Kelly Nudelman, Kelley Faber, Kristi Wilmes, Leon J. Thal, Lisa C. Silbert, Betty Lind, Rachel Crissey, Jeffrey Kaye, Raina Carter, Sara Dolen, Joseph F. Quinn, Sonia Pawluczyk, Mauricio Becerra, Liberty Teodoro, Karen Dagerman, Bryan M. Spann, James Brewer, Helen Vanderswag, Jaimie Ziolkowski, Judith L. Heidebrink, Lisa Zbizek-Nulph, Joanne Lord, Sara S. Mason, Colleen S. Albers, David S. Knopman, Kris Johnson, Javier Villanueva-Meyer, Valory Pavlik, Nathaniel Pacini, Ashley Lamb, Joseph S. Kass, Rachelle S. Doody, Victoria Shibley, Munir Chowdhury, Susan Rountree, Mimi Dang, Yaakov Stern, Lawrence S. Honig, Akiva Mintz, Beau M. Ances, David Winkfield, Maria Carroll, Georgia Stobbs-Cucchi, Angela Oliver, Mary L. Creech, Mark A. Mintun, Stacy Schneider, David Geldmacher, Marissa Natelson Love, Randall Griffith, David W. Clark, John Brockington, Daniel Marson, Hillel Grossman, Martin Goldstein, Jonathan Greenberg, Effie Mitsis, Raj C. Shah, Melissa Lamar, Patricia Samuels, Ranjan Duara, Maria T. Greig‐Custo, Rosemarie Rodriguez, Marilyn Albert, Chiadi U. Onyike, Leonie Farrington, Scott Rudow, Rottislav Brichko, Stephanie Kielb, Amanda Smith, Balebail Ashok Raj, Kristin Fargher, Martin Sadowski, Thomas Wısnıewskı, Melanie Shulman, Arline Faustin, Julia Rao, Karen M. Castro, Anaztasia Ulysse, Shannon Chen, Mohammed O. Sheikh, Jamika Singleton-Garvin, P. Murali Doraiswamy, Olga James, Terence Z. Wong, Salvador Borges‐Neto, Jason Karlawish, David A. Wolk, Sanjeev Vaishnavi, Christopher M. Clark, Steven E. Arnold, Charles D. Smith, Gregory A. Jicha, Riham El Khouli, Flavius D. Raslau, Oscar L. López, MaryAnn Oakley, Kim Martin, Nancy Kowalski, Melanie Keltz, Bonnie S. Goldstein, Kelly M. Makino, M. Saleem Ismail, Connie Brand, Aimee Pierce, Beatriz Yáñez‐Rivera, Megan Witbracht, Brendan Kelley, Trung Dung Nguyen, Kyle Womack, Dana Mathews, Mary Quiceno, Allan I. Levey, James J. Lah, Ihab Hajjar, Janet S. Cellar, Jeffrey M. Burns, Russell H. Swerdlow, William M. Brooks, Daniel Silverman, Sarah Kremen, Kathleen Tingus, Po H. Lu, George Bartzokis, Ellen Woo, Edmond Teng, Neill R. Graff‐Radford, Francine Parfitt, Kim Poki-Walker, Martin R. Farlow, Ann Marie Hake, Brandy R. Matthews, Jared R. Brosch, Scott Herring, Christopher H. van Dyck, Adam P. Mecca, Susan P. Good, Martha G. MacAvoy, Richard E. Carson, Pradeep Varma, Howard Chertkow, Susan Vaitekunis, Chris Hosein, Sandra E. Black, Bojana Stefanovic, Chris Heyn, Ging‐Yuek Robin Hsiung, Ellen Kim, Benita Mudge, Vesna Sossi, Howard Feldman, Michele Assaly, Elizabeth Finger, Stephen Pasternak, Irina Rachinsky, Andrew Kertesz, Dick Drost, John Rogers, Ian Grant, Brittanie Muse, Emily Rogalskı, Jordan Robson, M.‐Marsel Mesulam, Diana Kerwin, Chuang‐Kuo Wu, Nancy Johnson, Kristine Lipowski, Sandra Weıntraub, Borna Bonakdarpour, Nunzio Pomara, Raymundo Hernando, Antero Sarrael, Howard J. Rosen, Bruce L. Miller, David C. Perry, Raymond Scott Turner, Kathleen Johnson, Jessica Poe, Reisa A. Sperling, Keith A. Johnson, Gad A. Marshall, Steven Chao, Jaila Coleman, Jessica D. White, Allyson Rosen, Jared Tinklenberg, Christine M. Belden, Alireza Atri, Kelly Clark, Edward Zamrini, Marwan N. Sabbagh, Ronald Killiany, Robert A. Stern, Jesse Mez, Neil W. Kowall, Andrew E. Budson, Thomas O. Obisesan, Saba Wolday, Javed Khan, Alan J. Lerner, Paula Ogrocki, Curtis Tatsuoka, Parianne Fatica, Pauline Maillard, John Olichney, Charles DeCarli, Owen Carmichael, Vernice Bates, Horacio Capote, Michelle Rainka, Michael Borrie, T‐Y Lee, Robert Bartha, Sterling C. Johnson, Allison Perrin, Anna Burke, Douglas W. Scharre, Maria Kataki, Rawan Tarawneh, David Hart, Earl A. Zimmerman, Dzintra Celmins, Del D. Miller, Laura L. Boles Ponto, Karen Ekstam Smith, Hristina Koleva, Hyungsub Shim, Ki Won Nam, Susan K. Schultz, Jeff D. Williamson, Suzanne Craft, Jo Cleveland, Mia Yang, Kaycee M. Sink, Brian R. Ott, Jonathan Drake, Geoffrey Tremont, Lori A. Daiello, Aaron Ritter, Charles Bernick, Donna Munic, Abigail O’Connelll, Arthur Wiliams, Joseph C. Masdeu, Jiong Shi, Angelica Garcia, Paul Newhouse, Steven Potkin, Stephen Salloway, Paul Malloy, Stephen Correia, Smita Kittur, Godfrey D. Pearlson, Karen Blank, Karen Anderson, Laura A. Flashman, Marc Seltzer, Mary L. Hynes, Robert B. Santulli, Norman Relkin, Gloria Chiang, Michael Z. Lin, Athena Lee, Andrew J. Saykin, Thomas C. Neylan, Jordan Grafman, Sarah Danowski, Catherine Nguyen-Barrera, Jacqueline Hayes, Shannon Finley, Matt A. Bernstein, Bret Borowski, Chad Ward, Norm Foster, Sungeun Kim, Kimberly S. Blanchard, Debra Fleischman, Konstantinos Arfanakis, Daniel Varón, Maria T. Greig, Kimberly S. Martin, Christopher Reist, Carl Sadowsky, Walter Martínez, Teresa Villena, Elaine R. Peskind, Eric C. Petrie, Gail Li, Rema Raman, Gustavo Jimenez‐Maggiora, Caileigh Zimmerman, Scott Mackin, Erin Drake, Mike Donohue, David Bickford, Meryl A. Butters, Michelle Zmuda, Denise A. Reyes, Karen Crawford, Tatiana Foroud, Kelley M. Faber, Kwangsik Nho, Yiu Ho Au, Kelly Scherer, Daniel Catalinotto, Samuel Stark, Elise Ong, Dariella Fernandez

Bibliographic record

VenueJournal of the Royal Statistical Society Series B (Statistical Methodology) · 2024
Typearticle
Languageen
FieldMathematics
TopicStatistical Methods and Inference
Canadian institutionsnot available
FundersNational Institute of Biomedical Imaging and BioengineeringNational Institute on AgingNational Science Foundation of Sri LankaNational Institutes of HealthGenentechIXICOH. Lundbeck A/SServierEisaiPfizerNovartis Pharmaceuticals CorporationMeso Scale DiagnosticsNorthern California Institute for Research and EducationF. Hoffmann-La RocheUniversity of Southern CaliforniaBristol-Myers SquibbEli Lilly and CompanyBiogenBioClinicaCanadian Institutes of Health ResearchNational Science Foundation
KeywordsLinear discriminant analysisDiseaseNonlinear systemArtificial intelligenceDiscriminantPattern recognition (psychology)Computer sciencePsychologyMachine learningMathematicsEconometricsStatisticsMedicinePathologyPhysics

Abstract

fetched live from OpenAlex

We introduce a novel framework for the classification of functional data supported on nonlinear, and possibly random, manifold domains. The motivating application is the identification of subjects with Alzheimer's disease from their cortical surface geometry and associated cortical thickness map. The proposed model is based upon a reformulation of the classification problem as a regularized multivariate functional linear regression model. This allows us to adopt a direct approach to the estimation of the most discriminant direction while controlling for its complexity with appropriate differential regularization. Our approach does not require prior estimation of the covariance structure of the functional predictors, which is computationally prohibitive in our application setting. We provide a theoretical analysis of the out-of-sample prediction error of the proposed model and explore the finite sample performance in a simulation setting. We apply the proposed method to a pooled dataset from Alzheimer's Disease Neuroimaging Initiative and Parkinson's Progression Markers Initiative. Through this application, we identify discriminant directions that capture both cortical geometric and thickness predictive features of Alzheimer's disease that are consistent with the existing neuroscience literature.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.016
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: Theoretical or conceptual
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.421
Threshold uncertainty score0.993

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0040.016
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.001
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.197
GPT teacher head0.429
Teacher spread0.232 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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Same venueJournal of the Royal Statistical Society Series B (Statistical Methodology)Same topicStatistical Methods and InferenceFrench-language works237,207