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Record W4393156617 · doi:10.1101/2024.03.23.586386

Structural insights into the agonist selectivity and structure-based engineering of the adenosine A3 receptor

2024· preprint· en· W4393156617 on OpenAlexaff
Hidetaka S. Oshima, Akiko Ogawa, Fumiya K. Sano, Hiroaki Akasaka, Tomoyoshi Kawakami, Hiroyuki H. Okaomto, A. Iwama, Chisae Nagiri, Fan‐Yan Wei, Wataru Shihoya, Osamu Nureki

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicReceptor Mechanisms and Signaling
Canadian institutionsInstitute of Aging
FundersExploratory Research for Advanced TechnologyJapan Society for the Promotion of ScienceOno Medical Research FoundationKao Foundation for Arts and SciencesJapan Agency for Medical Research and DevelopmentUehara Memorial Foundation
KeywordsAgonistAdenosine receptorAdenosineChemistryReceptorFunctional selectivitySelectivityPharmacologyNeuroscienceBiophysicsBiologyBiochemistry

Abstract

fetched live from OpenAlex

Abstract Adenosine receptors, expressed across various tissues, play pivotal roles in physiological processes and are implicated in diverse diseases, including neurological disorders and inflammation, highlighting the therapeutic potential of receptor-selective agents. The Adenosine A3 receptor (A 3 R), the last identified adenosine receptor, is also activated by breakdown products of post-transcriptionally modified tRNA and exhibits dual roles in neuron, heart, and immune cells, and is often overexpressed in tumors, making it a target for anticancer therapy. Despite extensive studies on the other adenosine receptors, the structure and activation mechanism of A 3 R, especially by selective agonists like N 6 -methyladenosine (m 6 A) and namodenoson, remained elusive. Here, we identified N 6 -isopentenyl adenosine (i 6 A), a novel A 3 R-selective ligand, via comprehensive modified adenosine library screening. Cryo-EM analyses of A 3 R-G i signaling complexes with two nonselective and three selective agonists revealed the structural basis for A 3 R activation. We further conducted structure-guided engineering of m 6 A-insensitive A 3 R, which would greatly facilitate future discoveries of the physiological functions of the selective activation of A 3 R by modified adenosines. Our results clarify the selective activation of adenosine receptors, providing the basis for future drug discovery.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.189
Teacher spread0.184 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicReceptor Mechanisms and Signaling→French-language works237,207→