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Record W4393166614 · doi:10.1016/j.jbc.2024.106347

Abstract 1421 Staphylococcus aureus oleate hydratase produces ligands that activate PPARalpha

2024· article· en· W4393166614 on OpenAlexaff
Christopher D. Radka, Jason W. Rosch, Charles O. Rock

Bibliographic record

VenueJournal of Biological Chemistry · 2024
Typearticle
Languageen
FieldMedicine
TopicPeptidase Inhibition and Analysis
Canadian institutionsUniversity of New Brunswick
FundersNational Institutes of HealthAmerican Lebanese Syrian Associated Charities
KeywordsStaphylococcus aureusChemistryMicrobiologyBiologyBacteriaGenetics

Abstract

fetched live from OpenAlex

Commensal gut bacteria use oleate hydratase (OhyA) to release a spectrum of hydroxylated fatty acids using host-derived unsaturated fatty acids. These compounds are thought to attenuate the immune response, but the underlying signaling mechanism(s) remain to be established. The pathogen Staphylococcus aureus also expresses an OhyA and 10-hydroxyoctadecanoic acid (h18:0) is the most abundant OhyA metabolite found at Staphylococcal skin infection sites. Here, we show h18:0 stimulates the transcription of a set of lipid metabolism genes associated with the activation of peroxisome proliferator activated receptor (PPAR) in the RAW 264.7 macrophage cell line and mouse primary bone marrow-derived macrophages (BMDM). Cell-based transcriptional reporter assays show h18:0 selectively activates PPARα. Radiolabeling experiments with BMDM show [1-14C]h18:0 is not incorporated into cellular lipids, but is degraded by β-oxidation, and mass spectrometry detected shortened fragments of h18:0 released into the media. The catabolism of h18:0 was >10-fold lower in BMDM isolated from Ppara-/- knockout mice, and we recover 1-log fewer S. aureus cells from the skin infection site of Ppara-/- knockout mice compared to wildtype mice. These data identify PPARα as a target for OhyA-derived hydroxy fatty acids and support the existence of an OhyA-PPARα signaling axis that functions to suppress the innate immune response to S. aureus. This work was supported by National Institutes of Health, United States grants R00-AI166116 (C. D. R.) and R01-GM034496 (C. O. R.), and the American Lebanese Syrian Associated Charities, United States. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.025

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0070.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.299
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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