MétaCan
Menu
← Back to cohort
Record W4393167917 · doi:10.1016/j.jbc.2024.106510

Abstract 2440 Regulation of the Mitochondrial Pyruvate Carrier by the Wnt/beta-catenin pathway

2024· article· en· W4393167917 on OpenAlexaff
Luis Cedeño-Rosario, Nimo M. Abdi, Alex J. Bott, Joshua Youngs, Jared Rutter

Bibliographic record

VenueJournal of Biological Chemistry · 2024
Typearticle
Languageen
FieldMedicine
TopicOsteoarthritis Treatment and Mechanisms
Canadian institutionsUniversity of Saskatchewan
FundersNational Institutes of HealthHoward Hughes Medical Institute
KeywordsBeta-cateninBETA (programming language)ChemistryCateninMitochondrionWnt signaling pathwayBiochemistryComputer scienceSignal transduction

Abstract

fetched live from OpenAlex

Metabolism is one of the most tightly regulated cellular processes important for the maintenance of homeostasis. The mitochondrial pyruvate carrier (MPC) is a transmembrane protein that resides in the inner mitochondria membrane and facilitates the entry of pyruvate, which is necessary in several metabolic reactions such as TCA cycle. Our lab has previously shown that MPC expression is negatively correlated with Wnt/β-catenin target genes; however, the molecular mechanism behind the regulation of the MPC by the Wnt/β-catenin signaling pathway is not known. Based on our preliminary observations, we hypothesize that β-catenin acts as a repressor of the MPC. To investigate this regulation, we first performed a Fluorescence-activated cell sorting (FACS)-based genetic screening assay in liver cancer cells and found that β-catenin acts as a genetic repressor of the MPC. Furthermore, we treated liver cancer cells for 48h with GSK3 inhibitors (CHIR99021 or LY2090314) to activate the Wnt/β-catenin pathway, and MPC protein was analyzed by western blot. Interestingly, we found that MPC protein was reduced in cells treated with CHIR99021 or LY2090314 when compared to untreated cells. To investigate whether MPC expression was affected at the transcriptional level, we performed RT-qPCR and found that MPC1 and MPC2 transcripts were decreased in liver cancer cells treated with CHIR99021 or LY2090314. Overall, our results suggest that activation of β-catenin results in decreased MPC transcripts and protein levels. Taken together, we proposed a model where β-catenin acts as a repressor of the MPC in liver cancer cells. Future studies will be focus on characterizing the mechanism by which MPC expression is regulated by the Wnt/β-catenin pathway and the significance of this regulation in cell metabolism and cell fate. This work was supported by the National Institutes of Health (NIH) (to J.R.), the Howard Hughes Medical Institute (HHMI) (to J.R.) and the Burroughs Wellcome Fund (BWF) (to L.C.R).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.247
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueJournal of Biological Chemistry→Same topicOsteoarthritis Treatment and Mechanisms→French-language works237,207→