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Record W4393168040 · doi:10.1016/j.jbc.2024.106698

Abstract 2031 Modulation of the cell membrane lipid milieu by peroxisomes triggers inflammatory responses

2024· article· en· W4393168040 on OpenAlexafffund
Francesca Di Cara, Brendon Parsons, Stephanie Makdissi, Yizhu Mu, Beáta Dérfalvi

Bibliographic record

VenueJournal of Biological Chemistry · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPeroxisome Proliferator-Activated Receptors
Canadian institutionsDalhousie University
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health ResearchResearch Nova Scotia
KeywordsPeroxisomeCell biologyInflammationChemistryCellLipid metabolismBiochemistryBiologyReceptorImmunology

Abstract

fetched live from OpenAlex

Phagocytosis, receptor-mediated signal transduction, and inflammatory responses require changes in lipid metabolism. Peroxisomes are crucial in fatty acid homeostasis and were recently found to regulate immune function. In Drosophila, we found that macrophages lacking peroxisomes had perturbed phospholipid profiles, which reduced host survival after infection. We used lipidomic, transcriptomic, and genetic screens to determine that peroxisomes contribute to the cell membrane glycerophospholipid composition necessary to activate macrophages. Loss of peroxisome function increased membrane phosphatidic acid (PA), and it unbalanced Diacylglycerol species (DAG) during infection, inhibiting Rho1, TNF pathway, and NFk-B-mediated responses. Peroxisome-glycerophospholipid-mediated signaling also controlled this immune signaling in mouse immune cells. While high levels of PA and DAG in cells without functional peroxisomes inhibited inflammatory phenotypes, many peroxisomes and low concentrations of cell membrane PA and DAG are features of immune cells from patients with the inflammatory disorders, Kawasaki Disease, Juvenile Idiopathic Arthritis, and Familial Mediterranean Fever. Our findings that peroxisomal lipid metabolism contributes to glycerophospholipid signaling to support immune cell function reveal new metabolic markers and potential therapeutic targets for immune diseases, metabolic disorders, and chronic inflammation. This work was funded by a Project Grant from the 2019-20 Establishment Grant (Research Nova Scotia), the CIHR Project grant PJT-169179 and NSERC Discovey Grant RGPIN-2019-04083 to Francesca Di Cara.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.009
Threshold uncertainty score0.032

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0090.005

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.238
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

Explore more

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