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Record W4394109858 · doi:10.6084/m9.figshare.22067078

Analysis of the Microbiomes on Two Cultural Heritage Sites

2023· dataset· en· W4394109858 on OpenAlexaff
Chengshuai Zhu, Biao Wang, Mengxia Tang, Xin Wang, Qiang Li, Yulan Hu, Bingjian Zhang

Bibliographic record

VenueFigshare · 2023
Typedataset
Languageen
FieldEarth and Planetary Sciences
TopicBuilding materials and conservation
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsMicrobiomeCultural heritageGeographyArchaeologyBiologyBioinformatics

Abstract

fetched live from OpenAlex

In the World Cultural Heritage of Leshan Giant Buddha and the West Lake area, the statues and monuments have been affected by the colonizing organisms. In the past three years, we used next-generation sequencing technology to analyze the biofilm of 14 sites in two places. The result showed that microbiomes were different on monuments, especially in terms of microbial composition, diversity, and potential functions. More phototrophic organisms and bacteria involved in the nitrogen-sulfur cycle were found in the West Lake area (WLA), while heterotrophs were discovered in the Leshan Giant Buddha area (LGBA). The biofilms on sandstone in LGBA possessed a higher alpha diversity of bacteria and fungi community than that on limestone in WLA. Biofilms in LGBA showed higher gene expression in metabolisms, such as the metabolism of carbohydrates, lipids, xenobiotics, and terpenoids. While biofilms in WLA exhibited higher levels of genetic information processing genes, which are associated with coping with harsh environments. Combine with XRD and SEM-EDS analysis, petrographic properties were considered the main factors that affect biological colonization. Environmental conditions (temperature, humidity, and precipitation) were similar in the two regions, which are suitable for the growth of organisms. Microbiome dissimilarities (beta diversity) indicated that the microbial compositions of biofilms were associated with the geographic features of the sampling sites. The stones in the two regions have their own petrographic properties that greatly influence microbiome colonization, such as microstructure, porosity, water permeability, and minerals composition.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Dataset · Consensus signal: none
Teacher disagreement score0.012
Threshold uncertainty score0.025

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.048
GPT teacher head0.258
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2023
Admission routes1
Has abstractyes

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