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Record W4394224320 · doi:10.6084/m9.figshare.11874150

New species and reports of <i>Cuphophyllus</i> from northern North America compared with related Eurasian species

2020· dataset· en· W4394224320 on OpenAlexaboutno aff
Andrus Voitk, Irja Saar, D. Jean Lodge, David Boertmann, Shannon M. Berch, Ellen Larsson

Bibliographic record

VenueFigshare · 2020
Typedataset
Languageen
FieldAgricultural and Biological Sciences
TopicBryophyte Studies and Records
Canadian institutionsnot available
Fundersnot available
KeywordsGeographyGenealogyEcologyBiologyHistory

Abstract

fetched live from OpenAlex

This study describes four gray or brown species of <i>Cuphophyllus</i> (Hygrophoraceae, Agaricales), two of them new species, restricted to arctic-alpine and northern boreal zones of North America, and relates them morphologically and phylogenetically using multigene and nuc rDNA internal transcribed spacer ITS1-5.8S-ITS (ITS barcode) analyses to their similar, known counterparts. <i>Cuphophyllus cinerellus</i>, epitypified here, is shown to be a pan-palearctic species with sequence-confirmed collections from Fennoscandia and easternmost Asia. Occupying a similar habitat in the Nearctic is its sister species, the morphologically similar but novel <i>C. esteriae</i>, so far known only from eastern North America, including Greenland. Sister to the <i>C. cinerellus</i>–<i>C. esteriae</i> lineage, and known only from boreal raised <i>Sphagnum</i> bogs in Newfoundland, is a new medium-sized light cinereous brown species, <i>C. lamarum</i>. It has a yellow stipe but is phylogenetically distant from the yellow-stiped European <i>C. flavipes</i> and its North American sister species, <i>Hygrophorus pseudopallidus</i>. As cryptic speciation was discovered within <i>C. flavipes</i>, we lecto- and epitypify the name and transfer <i>H. pseudopallidus</i> to <i>Cuphophyllus</i> based on ITS analysis of the holotype. We also transfer the small European <i>Hygrocybe comosa</i> to <i>Cuphophyllus</i> based on morphology. <i>Cuphophyllus hygrocyboides</i> is reported from North America with the first sequence-confirmed collections from arctic-alpine British Columbia and Greenland. In addition, sequencing the holotype of <i>C. subviolaceus</i> identifies it as the sister species to the putative <i>C. lacmus</i>. Both species seem to have an intercontinental distribution. In total, we add new sequences to GenBank from 37 <i>Cuphophyllus</i> collections, including the holotypes of <i>C. hygrocyboides</i> and <i>C. subviolaceus</i>, the two new epitypes, and the two novel species.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.119
Threshold uncertainty score0.994

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0610.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.182
Teacher spread0.162 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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