MétaCan
Menu
Back to cohort
Record W4394873115 · doi:10.1177/10668969241234321

The 1000 Mitoses Project: A Consensus-Based International Collaborative Study on Mitotic Figures Classification

2024· article· en· W4394873115 on OpenAlexaff
Sherman Lin, Christopher Tran, Ela Bandari, Tommaso Romagnoli, Yueyang Li, Michael Chu, Abinaya Sundari Amirthakatesan, Adam Dallmann, A. O. Kostiukov, Ángel Panizo, Anjelica Hodgson, Anna Laury, António Polónia, Ashley Stueck, Aswathy Ashok Menon, Aurélien Morini, Birsen Gizem Özamrak, Caroline Cooper, Celestine Trinidad, Christian Eisenlöffel, Dauda E. Suleiman, David Suster, David A. Dorward, Eman Aljufairi, Fiona Maclean, Gulen Gul, Irene Sansano, Irma Elisa Eraña Rojas, Isidro Machado, Ivana Kholová, Jayanthi Karunanithi, Jean‐Baptiste Gibier, Jefree J. Schulte, Joshua Li, Jyoti Kini, Katrina Collins, Laurence A. Galea, Louis Muller, Luca Cima, Luiz M. Nova‐Camacho, Marcus Dabner, Matthew J. Muscara, Matthew G. Hanna, Mehdi Agoumi, Nicholas J. P. Wiebe, N. Oswald, Nusrat Zahra, Olaleke Oluwasegun Folaranmi, Oleksandr Kravtsov, Orhan Semerci, Namrata N. Patil, Preethi Muthusamy Sundar, P. Charles, Priyadarshini Kumaraswamy Rajeswaran, Qi Zhang, Rachael van der Griend, Raghavendra Pillappa, Raul Perret, Raul S. González, Robyn C. Reed, Sachin Patil, Xiaoyin “Sara” Jiang, Sumaira Qayoom, Susan Prendeville, Swikrity Upadhyay Baskota, Thanh-Truc Tran, Thar-Htet San, Tiia-Maria Kukkonen, Timothy J. Kendall, Toros Taşkın, Tristan Rutland, Varsha Manucha, Vincent Cockenpot, Yale Rosen, Yessica P. Rodriguez-Velandia, Zehra Ordulu, Matthew J. Cecchini

Bibliographic record

VenueInternational Journal of Surgical Pathology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsUniversity of CalgarySurrey Memorial HospitalDalhousie UniversityUniversity Health NetworkLondon Health Sciences CentreWestern University
FundersNational Cancer InstituteHacettepe ÜniversitesiMedizinischen Hochschule HannoverFeinberg School of MedicineRowan UniversityNorthwestern University
KeywordsMitosisGrading (engineering)Mitotic indexComputer scienceMedicineMedical physicsBiologyGenetics

Abstract

fetched live from OpenAlex

Introduction. The identification of mitotic figures is essential for the diagnosis, grading, and classification of various different tumors. Despite its importance, there is a paucity of literature reporting the consistency in interpreting mitotic figures among pathologists. This study leverages publicly accessible datasets and social media to recruit an international group of pathologists to score an image database of more than 1000 mitotic figures collectively. Materials and Methods. Pathologists were instructed to randomly select a digital slide from The Cancer Genome Atlas (TCGA) datasets and annotate 10-20 mitotic figures within a 2 mm 2 area. The first 1010 submitted mitotic figures were used to create an image dataset, with each figure transformed into an individual tile at 40x magnification. The dataset was redistributed to all pathologists to review and determine whether each tile constituted a mitotic figure. Results. Overall pathologists had a median agreement rate of 80.2% (range 42.0%-95.7%). Individual mitotic figure tiles had a median agreement rate of 87.1% and a fair inter-rater agreement across all tiles (kappa = 0.284). Mitotic figures in prometaphase had lower percentage agreement rates compared to other phases of mitosis. Conclusion. This dataset stands as the largest international consensus study for mitotic figures to date and can be utilized as a training set for future studies. The agreement range reflects a spectrum of criteria that pathologists use to decide what constitutes a mitotic figure, which may have potential implications in tumor diagnostics and clinical management.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.070
metaresearch head score (Gemma)0.149
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.070
Threshold uncertainty score0.370

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0700.149
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0260.013
Science and technology studies0.0030.002
Scholarly communication0.0060.003
Open science0.0060.011
Research integrity0.0030.003
Insufficient payload (model declined to judge)0.0070.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.334
Teacher spread0.313 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueInternational Journal of Surgical PathologySame topicCancer Genomics and DiagnosticsFrench-language works237,207