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Record W4395067780 · doi:10.1139/cjb-2023-0147

Phylogenetic placement of <i>Carex dianae</i> Steud., a sedge endemic to the South Atlantic island of St. Helena

2024· article· en· W4395067780 on OpenAlexafffundvenue
Cassandra D.V. Bradshaw, Diana M. Percy, Vanessa Thomas-Williams, Rebecca Cairns-Wicks, Alan Gray, Quentin Cronk

Bibliographic record

VenueBotany · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBotany, Ecology, and Taxonomy Studies
Canadian institutionsUniversity of OttawaUniversity of British Columbia
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsBiologyBotanyPhylogenetic treeCarexCyperaceaePhylogenetic relationshipPhylogeneticsEcologyPoaceae

Abstract

fetched live from OpenAlex

Carex dianae Steud. is an endemic sedge of St. Helena, an isolated island in the South Atlantic. Our study provides the first molecular sequence data for this taxon. We generated sequence data for plastid matK and trnK regions and nuclear internal transcribed spacer and external transcribed spacer regions to determine the placement of C. dianae in the broader Carex phylogeny. The placement of C. dianae falls within Carex sect. Spirostachyae Drejer, and it is sister to a clade including Carex clavata Thunb., Carex aethiopica Schkuhr (both from the Cape region of S. Africa), and Carex gunniana Boott (southern Australia). The existence of three divergent nucleotype groups and two plastotypes is revealed from genetic variation within C. dianae. The results suggest that the ancestor of C. dianae likely originated in the Cape region of South Africa, followed by transoceanic dispersal to St. Helena estimated at 4.4–4.9 million years ago, likely by a bird vector. The most divergent population is that on an isolated hill known as “The Barn”, which may represent a distinct taxon. The existence of highly structured molecular variation within an island only 16 km long is discussed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.018

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.216
Teacher spread0.195 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes3
Has abstractyes

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