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Record W4395563632 · doi:10.15468/dl.8hhgup

Occurrence Download

2020· dataset· en· W4395563632 on OpenAlexaboutno aff

Bibliographic record

VenueGlobal Biodiversity Information Facility · 2020
Typedataset
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsnot available
Fundersnot available
KeywordsDownloadComputer scienceWorld Wide Web

Abstract

fetched live from OpenAlex

A dataset listing the 120321 species recorded in GBIF matching the query: { "and" : [ { "or" : [ "BasisOfRecord is Living Specimen", "BasisOfRecord is Specimen", "BasisOfRecord is Literature Occurrence", "BasisOfRecord is Material sample" ] }, { "or" : [ "Continent is Africa", "Continent is Antarctica", "Continent is Asia", "Continent is Oceania", "Continent is Europe", "Continent is North America", "Continent is South America" ] }, { "or" : [ "DatasetKey is Geographically tagged INSDC sequences", "DatasetKey is Field Museum of Natural History (Zoology) Mammal Collection", "DatasetKey is Mammalogy Collection - Royal Ontario Museum", "DatasetKey is NMNH Extant Specimen Records (USNM, US)", "DatasetKey is KUBI Mammalogy Collection", "DatasetKey is TTU Mammals Collection", "DatasetKey is LACM Vertebrate Collection", "DatasetKey is MSB Mammal Collection (Arctos)", "DatasetKey is MVZ Mammal Collection (Arctos)", "DatasetKey is Australian Museum provider for OZCAM" ] }, "HasCoordinate is true", "HasGeospatialIssue is false", "OccurrenceStatus is Present" ] } The dataset's 120321 records were derived from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086132-200613084148143/datasets/export for details. Data from some individual datasets included in this download may be licensed under less restrictive terms.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesInsufficient payload (model declined to judge)
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.570
Threshold uncertainty score0.813

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.007
Meta-epidemiology (narrow)0.0030.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0070.011
Science and technology studies0.0010.000
Scholarly communication0.0040.004
Open science0.0030.005
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.4300.556

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.207
Teacher spread0.193 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2020
Admission routes1
Has abstractyes

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