Bibliographic record
Abstract
A dataset containing 112362 species occurrences available in GBIF matching the query: { "and" : [ "TaxonKey is one of (Melampsoridium hiratsukanum S.Ito ex Hirats.f., Podosphaera macularis (Wallr.) U.Braun & S.Takam., Discula destructiva Redlin, Phakopsora meibomiae (Arthur) Arthur, Tilletia indica Mitra, Phialophora cinerescens (Wollenw.) J.F.H.Beyma, Mycosphaerella rabiei Kovatsch. ex Gruyter, Stigmina deflectens (P.Karst.) M.B.Ellis, Ophiostoma tenellum (R.W.Davidson) M.Villarreal, Crustodontia chrysocreas (Berk. & M.A.Curtis) Hjortstam & Ryvarden, Melampsora larici-populina Kleb., Sphaeropsis sapinea (Fr.) Dyko & B.Sutton, Ceratocystis fimbriata Ellis & Halst., Gymnosporangium sabinae (Dicks.) G.Winter, Elsinoe australis Bitanc. & Jenkins, Ustilago esculenta Henn., Mycosphaerella laricina (R.Hartig) Mig., Puccinia hemerocallidis Thüm., Cyclaneusma minus (Butin) DiCosmo, Peredo & Minter, Venturia saliciperda Nüesch, Rhytisma acerinum (Pers.) Fr., Ceratocystis fagacearum (Bretz) J.Hunt, Fusarium circinatum Nirenberg & O'Donnell, Puccinia P.Micheli ex Haller, 1768, Gnomoniopsis smithogilvyi L.A.Shuttlew., E.C.Y.Liew & D.I.Guest, Ophiostoma piliferum (Fr.) Syd. & P.Syd., Cronartium pini (Willd.) Jørst., Amanita phalloides (Vaill. ex Fr.) Link, Dichotomophthora Mehrlich & Fitzpatrick, 1935, Pestalotiopsis disseminata (Thüm.) Steyaert, Neonectria coccinea (Pers.) Rossman & Samuels, Huntiella moniliformis (Hedgc.) Z.W.de Beer, T.A.Duong & M.J.Wingf., Verticillium alboatrum Reinke & Berthold, Tilletia walkeri Castl. & Carris, Stromatinia cepivora (Berk.) Whetzel, Fusarium graminearum Schwabe, Bipolaris maydis (Y.Nisik. & C.Miyake) Shoemaker, Graphium euwallaceae Twizeyim., S.C.Lynch & Eskalen, Phyllosticta citricarpa (McAlpine) Aa, Ophiognomonia clavigignenti-juglandacearum (V.M.G.Nair, Kostichka & J.E.Kuntz) Broders & G.J.Boland, Dothistroma septosporum (Dorogin) M.Morelet, Ophiostoma novo-ulmi Brasier, Lachnellula willkommii (R.Hartig) Dennis, Graphium kuroshium F.Na, J.D.Carrillo & Eskalen, Raffaelea lauricola T.C.Harr., Fraedrich & Aghayeva, Puccinia modiolae P.Syd. & Syd., Leptographium procerum (W.B.Kendr.) M.J.Wingf., Phakopsora pachyrhizi Syd. & P.Syd., Septoria glycines Hemmi, Eballistra oryzae (Syd. & P.Syd.) R.Bauer, Begerow, A.Nagler & Oberw., Puccinia graminis Pers., Helicobasidium longisporum Wakef., Fusarium oxysporum Schltdl., Tilletia caries (DC.) Tul. & C.Tul., Nalanthamala diospyri (Crand.) Schroers & M.J.Wingf., Lecanosticta acicola (Thüm.) Syd., Phyllachora maydis Maubl., Epicoccum sorghinum (Sacc.) Aveskamp, Gruyter & Verkley, Apiognomonia veneta (Sacc. & Speg.) Höhn., Neonectria faginata (M.L.Lohman, A.M.J.Watson & Ayers) Castl. & Rossman, Cryphonectria parasitica (Murrill) M.E.Barr, Paracremonium pembeum S.C.Lynch & Eskalen, Puccinia striiformis Westend., Puccinia chondrillina Bubák & Syd., Cryptodiaporthe populea (Sacc.) Butin, Calonectria pseudonaviculata (Crous, J.Z.Groenew. & C.F.Hill) L.Lombard, M.J.Wingf. & Crous, Leptographium wingfieldii M.Morelet, Gremmeniella abietina (Lagerb.) M.Morelet, Urocystis tritici Körn., Claviceps africana Freder., Mantle & De Milliano, Allantophomopsiella pseudotsugae (M.Wilson) Crous, Pseudogymnoascus destructans (Blehert & Gargas) Minnis & D.L.Lindner, Amylostereum areolatum (Chaillet ex Fr.) Boidin, Puccinia pelargonii-zonalis Doidge, Gymnosporangium asiaticum Miyabe ex G.Yamada, Golovinomyces verbasci (Jacz.) V.P.Heluta, Colletotrichum queenslandicum B.S.Weir & P.R.Johnst., Puccinia suaveolens (Pers.) Rostr., Sporisorium cruentum (J.G.Kühn) Vánky, Puccinia calcitrapae DC., Batrachochytrium dendrobatidis Longcore, Pessier & D.K.Nichols, Uromyces transversalis (Thüm.) G.Winter, Austropuccinia psidii (G.Winter) Beenken, Neocosmospora euwallaceae (S.Freeman, Z.Mendel, T.Aoki & O'Donnell) Sand.-Den., L.Lombard & Crous, Chrysomyxa rhododendri (DC.) de Bary, Ophiostoma ulmi (Buisman) Nannf., Rigidoporus vinctus (Berk.) Ryvarden, Cronartium ribicola A.Dietr., Fusarium kuroshium (F.Na, J.D.Carrillo & A.Eskalen ex Sand.-Den. & Crous) O'Donnell, Geiser, Kasson & T.Aoki, Erythricium salmonicolor (Berk. & Broome) Burds., Oxyporus subulatus Ryvarden, Psammonobiotus communis Golemansky, 1967, Skeletonema potamos (C.I.Weber) Hasle, 1976, Trochammina hadai Uchio, 1962, Colpomenia peregrina Sauv., Coscinodiscus wailesii Gran & Angst, 1931, Stephanodiscus binderanus (Kützing) Krieger, 1927, Peronospora belbahrii Thines, Thalassiosira punctigera Castracane, 1886, Phytophthora ramorum Werres, De Cock & Man, Sargassum horneri (Turner) C.Agardh, 1820, Stephanodiscus subtilis (Goor) A.Cleve, 1951, Elachista Duby, 1830, Phytophthora pseudocryptogea Safaief., Mostowf., G.E.Hardy & T.I.Burgess, Undaria pinnatifida (Harv.) Suringar, Phytophthora lateralis Tucker & Milbrath, Cyclotella atomus Hustedt, 1937, Chorda Stackhouse, 1797, Dictyota ciliolata O.G.Sond. ex Kütz., Cutleria cylindrica Okam., Hymenomonas roseola F.Stein, Psammonobiotus Golemansky, 1968, Odontella sinensis (Greville) Grunow, 1884, Phytophthora cinnamomi Rands, Skeletonema subsalsum (Cleve-Euler) Bethge, 1928, Prymnesium parvum N.Carter, Sphacelaria H.C.Lyngbye, 1818, Phytophthora tentaculata Kröber & Marwitz, Spongospora subterranea (Wallr.) Lagerh., Cyclotella pseudostelligera Hustedt, 1939, Acineta nitocrae, Ancistrum cyclidioides (Issel, 1918), Thalassiosira baltica (Grunow) Ostenfeld, 1901, Phytophthora quercina T.Jung, Sargassum muticum Yendo, Cotton leafroll dwarf virus, Influenza A virus, Plantago asiatica mosaic virus, Monkeypox virus, Tomato yellow leaf curl virus, Tulip virus X, Carp sprivivirus, Sweet potato chlorotic stunt virus, West Nile virus, Hop stunt viroid, Rabbit hemorrhagic disease virus, Soybean dwarf virus, Colombian datura virus, Severe acute respiratory syndrome-related coronavirus, Potato mop-top virus, Cowpea mild mottle virus, Cucumber green mottle mosaic virus, Fowlpox virus, Bean common mosaic necrosis virus, Avocado sunblotch viroid, Cotton leaf curl Gezira virus, Bean common mosaic virus, Xanthomonas citri, Aeromonas salmonicida (Lehmann & Neumann, 1896) Griffin et al., 1953, Renibacterium salmoninarum Sanders & Fryer, 1980, Xanthomonas oryzae, Xanthomonas campestris (Pammel, 1895) Dowson, 1939, Cylindrospermopsis raciborskii (Wołosz.) Seenayya & Subbaraju, Liberibacter asiaticus)", "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)", { "not" : { "Country" : [ "is one of (United States of America, Canada, Mexico)" ] } }, "HasCoordinate is true", "OccurrenceStatus is Present", "Year is greater than or equal to 1990", "CoordinateUncertaintyInMeters is less than 1000", "ScientificName is not null", "DecimalLongitude is not null", "DecimalLatitude is not null" ] } The dataset includes 112362 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032193-231120084113126/datasets/export for details. Data from some individual datasets included in this download may be licensed under less restrictive terms.
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.006 |
| Meta-epidemiology (narrow) | 0.003 | 0.001 |
| Meta-epidemiology (broad) | 0.002 | 0.002 |
| Bibliometrics | 0.007 | 0.012 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.004 | 0.004 |
| Open science | 0.003 | 0.003 |
| Research integrity | 0.003 | 0.002 |
| Insufficient payload (model declined to judge) | 0.246 | 0.354 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".