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Record W4396996428 · doi:10.1681/asn.20203110s1829c

Digenic Inheritance of Extracellular Matrix Mutations in a Family with FSGS

2020· article· en· W4396996428 on OpenAlexaff
Saidah Hack, Poornima Vijayan, Tony Yao, Mohammad Azfar Qureshi, Rohan John, Andrew D. Paterson, York Pei, Moumita Barua

Bibliographic record

VenueJournal of the American Society of Nephrology · 2020
Typearticle
Languageen
FieldMedicine
TopicBone and Dental Protein Studies
Canadian institutionsHospital for Sick ChildrenUniversity of TorontoToronto General Hospital
Fundersnot available
KeywordsInheritance (genetic algorithm)Extracellular matrixGeneticsMedicineBiologyGene

Abstract

fetched live from OpenAlex

Background: Focal and segmental glomerulosclerosis (FSGS) is a histologic pattern of injury that characterizes a wide spectrum of diseases with different pathophysiologies and for which current diagnostic methods often fail to distinguish molecular mechanisms. We have recently reported whole exome sequencing (WES) in an adult FSGS cohort but most disease still remains unexplained. Methods: In an unexplained family with adult-onset autosomal dominant FSGS, WES was performed in 3 affected relatives to identify candidate genes. Results: The proband presented with proteinuria in his 20s and a renal biopsy at age 41 demonstrated FSGS (Figure 1). His two brothers also had FSGS documented in the 4th and 5th decades of life. The proband and his elder brother developed end-stage renal disease (ESRD) in the 5th decade of life while the youngest brother has stage 3b A3 CKD at age 59. Of the proband's 3 sisters, one developed proteinuria at the time of last followup at age 54. Her daughter whose renal biopsy also demonstrated FSGS at age 23, had approximately 3.3 g/d of proteinuria and an eGFR of 48 ml/min at age 30. After WES, five heterozygous rare variants were identified and sequenced in all affected relatives. Two of these variants segregated in affected family members and encoded extracellular mesangial matrix proteins. Renal biopsies showed classic segmental sclerosis/hyalinosis lesion on a background of mild mesangial hypercellularity. One of these genes is already reported to cause an autosomal recessive neurologic disorder.Figure 1.: (A) Pedigree of family FSGS15. Individuals with solid dot represents microalbuminuria. (B) Renal biopsy shows FSGS with a background of mild mesangial hypercellularity (PAS, 20x). Ultrastructural examination showed mild podocyte foot process effacement (2500x). ECM = extracellular matrixConclusions: We postulate that the additive effect of heterozygous mutations in extracellular matrix proteins leads to adult-onset FSGS. The absence of clinically significant extra-renal symptoms is likely as a result of the impact of the mutation which should lead to translated protein rather than complete deficiency seen in autosomal recessive disorders. Our results provide a signal of more complicated genetic inheritance patterns in unexplained families. Funding: Private Foundation Support, Government Support - Non-U.S.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0020.001
Science and technology studies0.0020.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0050.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.281
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2020
Admission routes1
Has abstractyes

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