ApoA4 Mutations Cause Autosomal Dominant Tubulointerstitial Kidney Disease with Medullary Amyloidosis
Bibliographic record
Abstract
Background: We describe for the first time mutations in the APOA4 gene as a cause of inherited kidney disease. Methods: Whole genome sequencing was performed in 5 members of a large family with autosomal dominant tubulointerstitial kidney disease(ADTKD), and we then screened other ADTKD families in our registry for mutations in the identified gene. Results: There was an ˜15 megabase shared genomic region on chromosome 11 (chr11: 110012896- 124998347) with only one relevant candidate variant chr11:116692578 G>C (hg19) encoding for a missense mutation in APOA4 (NM_000482.4): c.196C>G (p.L66V). Using Sanger sequencing and segregation analysis, we genotyped 19 individuals from the family. Of 12 genetically affected individuals (10 genotyped and two obligate heterozygotes), 10 had CKD, with two females being as yet clinically unaffected. Of nine genetically unaffected, the lowest eGFR was 59 ml/min/1.73m2 at age 69. Screening families from our ADTKD registry, we identified two other distantly related families with the same variant and two distantly related families with a chr11:116693454 C>T (hg19) variant encoding the missense mutation p.D33N. All 31 clinically affected individuals suffered from CKD without proteinuria and a bland sediment and carried their familial pathogenic APOA4 mutation. The mean age of end-stage kidney disease was 72.7±10.2 for the p.L66V mutation and 58.2±1.1 for the p.D33N mutation (p=0.009). In an individual with the p.L66V mutation, pathologic examination of a nephrectomy specimen revealed marked medullary amyloid deposition, with mass-spectrometric analysis revealing the p.L66V ApoA4 protein as the predominant constituent. Four kidney biopsies containing only cortical tissue revealed no cortical amyloid deposition, while another biopsy containing cortex and medulla showed medullary amyloid deposits but no cortical amyloid deposits. In summary, ApoA4 mutations may lead to marked medullary amyloid deposition and ADTKD. Conclusions: For the first time, we identified mutations in the APOA4 gene as a cause of ADTKD. APOA4 mutations result in medullary ApoA4 deposition, which can be missed on routine kidney biopsies that only sample the renal cortex. Funding: Private Foundation Support
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.001 | 0.000 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.002 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".