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Record W4397043900 · doi:10.1681/asn.20233411s1224a

Sex Differences in Glomerular Protein Expression in Mice with Autosomal Recessive Alport Syndrome

2023· article· en· W4397043900 on OpenAlexaff
Emine Bilge Çaparali, V Gregorio, Akanchaya Rana, Joanna Cunanan, Sofia Farkona, Ana Konvalinka, Moumita Barua

Bibliographic record

VenueJournal of the American Society of Nephrology · 2023
Typearticle
Languageen
FieldMedicine
TopicCell Adhesion Molecules Research
Canadian institutionsPrincess Margaret Cancer CentreUniversity of TorontoToronto General HospitalUniversity Health Network
Fundersnot available
KeywordsAlport syndromeEndocrinologyInternal medicineMedicineBiologyRenal glomerulusGlomerulonephritisGeneticsKidney

Abstract

fetched live from OpenAlex

Background: Alport syndrome (AS) is a monogenic disorder that leads to progressive kidney disease, ear, and ocular abnormalities. It is caused by pathogenic variants in COL4A3, COL4A4, or COL4A5, which encode the α3, α4, and α5 chains of type IV collagen. COL4A3 and COL4A4 reside on chromosome 2q36, while COL4A5 is on the X chromosome. We evaluated for sex differences in mice with autosomal recessive AS. Methods: We compared differences in global protein expression in isolated glomeruli between 1-day old male and female Col4a3 knockout (KO) and wildtype (WT) mice with mass spectrometry (MS). MaxQuant was used for analysis and statistical tests were done on Perseus. Pathway analysis was performed using Gene Ontology. Results: At postnatal day 1 (P1), we observed more severe disease in male compared to female Col4a3 KO mice, as evidenced by higher urine albumin-creatinine ratios (uACR) (1088 mg/mmol vs. 875.6 mg/mmol, p=0.4). 309 significantly differentially expressed proteins in the glomerulus were identified, of which 208 were downregulated and 101 were upregulated in male Col4a3 KO mice. We also compared P1 WT male and female mice and no differentially expressed protein was detected at baseline. Interestingly, the well-known podocyte apical surface transmembrane sialoglycoprotein, podocalyxin, was upregulated in males compared to female Col4a3 KO mice. Pathway analysis showed that Col4a3 KO male mice also had decreased biological processes suggestive of impaired glomerular structure maintenance such as actin filament bundle assembly, cell morphogenesis involved in differentiation and endoplasmic reticulumnucleus signaling pathway. By contrast, pathways including peptide biosynthetic process and ATP biosynthetic process were found to be increased in male Col4a3 KO mice, possibly due to increased compensatory mechanisms. Conclusions: One day old male compared to female Col4a3 KO mice display more severe disease. Podocalyxin has been reported to be excreted in urine due to podocyte loss and we postulate that its upregulation in male Col4a3 KO mice may represent compensation. Overall, glomerular proteomic comparison highlights biological pathways that can explain phenotypic differences between male and female mice with autosomal recessive AS, though its mechanistic drivers are unclear. Funding: Private Foundation Support

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0040.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.295
Teacher spread0.275 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2023
Admission routes1
Has abstractyes

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