Sex Differences in Glomerular Protein Expression in Mice with Autosomal Recessive Alport Syndrome
Bibliographic record
Abstract
Background: Alport syndrome (AS) is a monogenic disorder that leads to progressive kidney disease, ear, and ocular abnormalities. It is caused by pathogenic variants in COL4A3, COL4A4, or COL4A5, which encode the α3, α4, and α5 chains of type IV collagen. COL4A3 and COL4A4 reside on chromosome 2q36, while COL4A5 is on the X chromosome. We evaluated for sex differences in mice with autosomal recessive AS. Methods: We compared differences in global protein expression in isolated glomeruli between 1-day old male and female Col4a3 knockout (KO) and wildtype (WT) mice with mass spectrometry (MS). MaxQuant was used for analysis and statistical tests were done on Perseus. Pathway analysis was performed using Gene Ontology. Results: At postnatal day 1 (P1), we observed more severe disease in male compared to female Col4a3 KO mice, as evidenced by higher urine albumin-creatinine ratios (uACR) (1088 mg/mmol vs. 875.6 mg/mmol, p=0.4). 309 significantly differentially expressed proteins in the glomerulus were identified, of which 208 were downregulated and 101 were upregulated in male Col4a3 KO mice. We also compared P1 WT male and female mice and no differentially expressed protein was detected at baseline. Interestingly, the well-known podocyte apical surface transmembrane sialoglycoprotein, podocalyxin, was upregulated in males compared to female Col4a3 KO mice. Pathway analysis showed that Col4a3 KO male mice also had decreased biological processes suggestive of impaired glomerular structure maintenance such as actin filament bundle assembly, cell morphogenesis involved in differentiation and endoplasmic reticulumnucleus signaling pathway. By contrast, pathways including peptide biosynthetic process and ATP biosynthetic process were found to be increased in male Col4a3 KO mice, possibly due to increased compensatory mechanisms. Conclusions: One day old male compared to female Col4a3 KO mice display more severe disease. Podocalyxin has been reported to be excreted in urine due to podocyte loss and we postulate that its upregulation in male Col4a3 KO mice may represent compensation. Overall, glomerular proteomic comparison highlights biological pathways that can explain phenotypic differences between male and female mice with autosomal recessive AS, though its mechanistic drivers are unclear. Funding: Private Foundation Support
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.002 | 0.001 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.001 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.004 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".