MétaCan
Menu
Back to cohort
Record W4399327517 · doi:10.1101/2024.06.03.24308405

Evaluating the Efficacy of Large Language Models for Systematic Review and Meta-Analysis Screening

2024· preprint· en· W4399327517 on OpenAlexaff
Ronald Luo, Ziya Sastimoglu, Abu Ilius Faisal, M. Jamal Deen

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldComputer Science
TopicTopic Modeling
Canadian institutionsMcMaster University
Fundersnot available
KeywordsMeta-analysisSystematic reviewComputer scienceNatural language processingPsychologyMedicineMEDLINEPolitical scienceInternal medicine

Abstract

fetched live from OpenAlex

ABSTRACT Background Systematic reviews and meta-analyses are essential for informed research and policymaking, yet they are typically resource-intensive and time-consuming. Recent advances in artificial intelligence and machine learning offer promising opportunities to streamline these processes. Objective To enhance the efficiency of systematic reviews, we explored the automation of various stages using GPT-3.5 Turbo. We assessed the model’s efficacy and performance by comparing it against three expert-conducted reviews across a comprehensive dataset of 24,534 studies. Methods The model’s performance was evaluated through a comparison with three expert reviews, utilizing a pseudo-K-folds permutation and a one-tailed ANOVA with an alpha level of 0.05 to ensure statistical validity. Key performance metrics such as accuracy, sensitivity, specificity, predictive values, F1-score, and the Matthews correlation coefficient were analyzed using two sets of prompts. Results Our approach significantly streamlined the systematic review process, which typically takes a year, reducing it to a few hours without sacrificing quality. In the initial screening phase, accuracy, specificity, and negative predictive values ranged between 80% and 95%. Sensitivity improved markedly during the second screening phase, demonstrating the model’s robustness when provided with more extensive data. Conclusion While ongoing refinements are needed, this tool represents a significant advancement in research methodologies, potentially making systematic reviews more accessible to a wider range of researchers. Impact Statement Our manuscript presents a novel review screening protocol built using open-source frameworks, which significantly enhances the systematic review process in terms of efficiency and cost-effectiveness. Leveraging the capabilities of GPT and embedding models, our protocol demonstrates the potential to transform a traditionally time-consuming and expensive task into an accelerated and economical operation, all while maintaining high standards of accuracy and reliability. Key Points GPT screening can streamline systematic reviews from a year-long, expensive process to just hours at minimal cost. Validated across different topics, the protocol exhibits high reliability and consistency in study inclusion. The AI-driven process reduces human bias, with prompt optimization considerably improving sensitivity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.782
Threshold uncertainty score0.563

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0070.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0020.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.002
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.195
GPT teacher head0.413
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuemedRxivSame topicTopic ModelingFrench-language works237,207