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Record W4400087691 · doi:10.1016/j.cbpa.2024.111688

Reporting guidelines for terrestrial respirometry: Building openness, transparency of metabolic rate and evaporative water loss data

2024· article· en· W4400087691 on OpenAlexaff
Nicholas C. Wu, Lesley A. Alton, Rafael Parelli Bovo, Nicholas Carey, Shannon E. Currie, John R. B. Lighton, Andrew E. McKechnie, Patrice Pottier, Giulia S. Rossi, Craig R. White, Danielle L. Levesque

Bibliographic record

VenueComparative Biochemistry and Physiology Part A Molecular & Integrative Physiology · 2024
Typearticle
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsMcMaster University
FundersAustralian Research CouncilNational Institute of Food and AgricultureFundação de Amparo à Pesquisa do Estado de São PauloU.S. Department of Agriculture
KeywordsRespirometryTransparency (behavior)ChecklistData qualityGuidelineOpenness to experienceAccountingEnvironmental resource managementBusinessComputer scienceEnvironmental sciencePsychologyBiologyMedicineService (business)Marketing

Abstract

fetched live from OpenAlex

Respirometry is an important tool for understanding whole-animal energy and water balance in relation to the environment. Consequently, the growing number of studies using respirometry over the last decade warrants reliable reporting and data sharing for effective dissemination and research synthesis. We provide a checklist guideline on five key sections to facilitate the transparency, reproducibility, and replicability of respirometry studies: 1) materials, set up, plumbing, 2) subject conditions/maintenance, 3) measurement conditions, 4) data processing, and 5) data reporting and statistics, each with explanations and example studies. Transparency in reporting and data availability has benefits on multiple fronts. Authors can use this checklist to design and report on their study, and reviewers and editors can use the checklist to assess the reporting quality of the manuscripts they review. Improved standards for reporting will enhance the value of primary studies and will greatly facilitate the ability to carry out higher quality research syntheses to address ecological and evolutionary theories.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.385
metaresearch head score (Gemma)0.719
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Reporting · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.615
Threshold uncertainty score0.758

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.3850.719
Meta-epidemiology (narrow)0.0030.005
Meta-epidemiology (broad)0.0050.008
Bibliometrics0.0220.017
Science and technology studies0.0060.006
Scholarly communication0.0120.009
Open science0.0080.008
Research integrity0.0110.012
Insufficient payload (model declined to judge)0.0430.031

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.178
GPT teacher head0.405
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainReporting
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2024
Admission routes1
Has abstractyes

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Same venueComparative Biochemistry and Physiology Part A Molecular & Integrative PhysiologySame topicSpecies Distribution and Climate ChangeFrench-language works237,207