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Record W4400418345 · doi:10.26434/chemrxiv-2024-q3v7b

Multi-edge X-ray Absorption Spectroscopic Evidence for Sulphur-based Redox in [4Fe-4S] Molecular Clusters

2024· preprint· en· W4400418345 on OpenAlexaff
Róbert K. Szilágyi

Bibliographic record

VenueChemRxiv · 2024
Typepreprint
Languageen
FieldEnergy
TopicMetalloenzymes and iron-sulfur proteins
Canadian institutionsUniversity of British Columbia, Okanagan Campus
Fundersnot available
KeywordsRedoxSulfurChemistryAbsorption (acoustics)XANESEnhanced Data Rates for GSM EvolutionPhotochemistryInorganic chemistryCrystallographyMaterials scienceSpectroscopyPhysicsOrganic chemistryComputer science

Abstract

fetched live from OpenAlex

Central to the dogma of Fe–S World Hypothesis for the Emergence of Biosphere is the transition from non-living Fe–S geochemistry to the molecular Fe–S biochemistry. While often assumed this being a trivial and spontaneous process; however, the chemical reality is a critical discontinuity of oxidation states of ferrous iron-based minerals and nanoparticles in low temperature hydrothermal environments and ferric iron-based prosthetic groups in metalloproteins. A recent ingenious synthetic effort enabled the access of the first four-electron transfer-series in [4Fe-4S] molecular cluster with the same aromatic thiolate ligand environment. This discovery opened up the possibility to probe a range of [4Fe-4S] cubanes from the geological all ferrous to the hypothetical all ferric cluster along with each intermediate oxidation state. Multi-edge X-ray absorption spectroscopic (meXAS) approach provided us with the insights to put forward the exclusive sulphur-based redox chemistry with only minor perturbations to the Fe centres. The meXAS results unambiguously prove that the Fe ions in the molecular cubanes remain essentially the same as in the mackinawite-like nanoparticles (n(FeS)(aq), 𝑛 <150) formed in the precipitation reaction of Fe2+(aq) and HS–(aq) ions under ambient aqueous conditions. Furthermore, the non- innocent redox chemistry of [4Fe-4S] clusters underscores the intimate relationship between the Fe and S ions that give rise to the concept of chimera of chemical elements - as the building block of Fe–S clusters and nanoparticles - with tantalizing chemical properties that neither of its components can manifest.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.055
GPT teacher head0.313
Teacher spread0.257 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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