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Record W4400644821 · doi:10.1021/acs.chemmater.4c00573

Preparation of Functionalized Mesoporous Silica Nanoparticles as Mass Tags for Potential Applications in Mass Cytometry

2024· article· en· W4400644821 on OpenAlexafffund
Xiaochong Li, Yang Liu, Yefeng Zhang, Daniel Majonis, Maryam Fashandi, Mitchell A. Winnik

Bibliographic record

VenueChemistry of Materials · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsCanadian Standards AssociationUniversity of Toronto
FundersNatural Sciences and Engineering Research Council of CanadaChina Scholarship Council
KeywordsMass cytometryMesoporous silicaNanoparticleMesoporous materialNanotechnologyMaterials scienceChemistryChemical engineeringOrganic chemistry

Abstract

fetched live from OpenAlex

Mass cytometry (MC) is an emerging and powerful bioanalytical technique for high-dimensional single-cell analysis. While metal-chelating polymers (MCPs) have been the most successful mass tag reagents for MC, nanoparticle (NP)-based mass tag reagents are of great interest to improve the sensitivity of MC toward low-abundance biomarkers. Here we present a new structure design for potential MC probes using multifunctionalized mesoporous silica nanoparticles (MSNs), modified with zwitterionic sulfobetaine silanes and long-chain polyethylene glycol silanes (PEG 5k, M = 5000). The resulting methoxy-terminated NPs (PMSN-Zwi-mPEG 5k ) displayed uniform size, good redispersibility and colloidal stability, as well as versatility in accommodating 13 types of lanthanides. They exhibited the capacity to carry up to 7.4 × 10 4 Tb ions per NP, with negligible ion loss observed in both H 2 O and 1× PBS buffer. We investigated the interactions of these functionalized NPs with serum proteins using UV–vis, and with peripheral blood mononuclear cells (PBMCs) using MC. By varying PEG 5k chain density on NP surface, we could minimize their nonspecific binding (NSB) to human serum albumin proteins, while also reducing their NSB to PBMCs at the titer of 1000 NPs/cell. Additionally, unconjugated NPs showed good compatibility with commercial Maxpar MCP mass tags in a 10-plex assay for PBMCs staining. Under these optimized conditions, N 3 -terminated NPs (PMSN-Zwi-PEG 5k -N 3 ) were synthesized and conjugated with antibiotin antibodies (Abs), resulting in effective binding of biotin Cy5 molecules. We finally compared eight different bioconjugation conditions to maximize bioconjugation efficiency with retention of Ab function. These preliminary findings demonstrate the fundamental technical capabilities and promising prospects for the future application of MSN-based mass tag reagents in MC.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.434

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.275
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2024
Admission routes2
Has abstractyes

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