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Developing Magnetic Resonance Reporter Gene Imaging: Essential Magnetosome Proteins Interact in Mammalian Cells

2024· article· en· W4400649273 on OpenAlexaff
Qin Sun, Fateh Ahmad, Cécile Fradin, Terry Thompson, Frank S. Prato, Donna E. Goldhawk

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldPhysics and Astronomy
TopicNuclear Physics and Applications
Canadian institutionsMcMaster UniversityLawson Health Research Institute
Fundersnot available
KeywordsMagnetosomeMagnetotactic bacteriaMagnetic resonance imagingMolecular biophysicsCell biologyNuclear magnetic resonanceBiologyBacteriaPhysicsGeneticsMedicine

Abstract

fetched live from OpenAlex

To detect cellular activities deep within the body using magnetic resonance (MR) platforms, magnetosomes are the ideal model of genetically-encoded nanoparticles. These organelle-like structures produced by magnetotactic bacteria (MTB) store iron biominerals in membrane-bound vesicles and are highly regulated by approximately 30 genes. To translate this technology into a gene-based iron contrast agent in mammalian cells [1], [2], we are introducing essential membrane-associated magnetosome (mam) genes mamI, mamL, mamB, and mamE into the human melanoma cell line MDA-MB-435 using fluorescent fusion protein vectors. While the expression of enhanced green fluorescent protein (EGFP)-MamI alone resulted in a net-like fluorescence pattern, individual expression of red fluorescent Tomato-MamL, Tomato-MamB, or Tomato-MamE all resulted in a mobile, punctate fluorescence pattern. Coexpression of MamL+I resulted in co-localization of both proteins in a mobile, punctate pattern. Here we report the transient expression of three magnetosome proteins (MamL+I+B or MamL+I+E) in mammalian cells, which results in the co-localization and interaction of all three proteins in a mobile, punctate pattern. These results further support interactions between essential magnetosome proteins in the mammalian intracellular compartment and the co-localization required to form a rudimentary magnetosome-like particle.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.001
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.249
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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