MétaCan
Menu
Back to cohort
Record W4400830318 · doi:10.1101/2024.07.16.603755

Untargeted metabolomics reveals anion and organ-specific biochemistry of salinity tolerance in willow

2024· preprint· en· W4400830318 on OpenAlexafffund
Eszter Sas, Adrien Frémont, Emmanuel González, Mathieu Sarrazin, Simon Barnabé, Michel Labrecque, Nicholas J. B. Brereton, Frédéric E. Pitre

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Stress Responses and Tolerance
Canadian institutionsEspace pour la vieUniversité du Québec à Trois-RivièresMcGill Genome CentreCollège de MaisonneuveMcGill UniversityUniversité de Montréal
FundersNatural Resources CanadaEnvironment and Climate Change CanadaNatural Sciences and Engineering Research Council of CanadaMitacsUniversity of Alberta
KeywordsMetabolomicsWillowComputational biologySalinityChemistryBiologyBiochemistryBotanyBioinformaticsEcology

Abstract

fetched live from OpenAlex

1 Abstract Willows can alleviate soil salinisation while generating sustainable feedstock for biorefinery, yet the metabolomic adaptations underlying their salt tolerance remain poorly understood. Testing two environmentally abundant salts, the response of Salix miyabeana was assessed after treatment with a moderate concentration of NaCl, and both moderate and high concentrations of Na 2 SO 4 in a 12-week pot trial. Willows tolerated salts across all treatments (up to 9.1dS m -1 soil EC e ), maintaining photosynthesis and biomass while selectively partitioning ions, confining Na + to roots and accumulating Cl - and SO 2- in the canopy, and adapting to osmotic stress via reduced stomatal conductance. Untargeted LC-MS/MS captured over 5,000 putative compounds, characterising the baseline willow metabolome, including 278 core compounds constitutively produced across organs. Comparative statistical analyses revealed widespread metabolic reprogramming in response to soil salinity, altering 28% of the overall metabolome, and highlighting organ-tailored regulation. Comparing both salt forms at equimolar sodium, generalised salinity responses were limited to 3% of the metabolome, predominantly in roots. Anion-specific metabolomic responses were more extensive, with NaCl reducing carbohydrates and TCA intermediates, thereby exerting pressure on carbon and energy resources, alongside the accumulation of root structuring compounds, antioxidants flavonoids, and fatty acids. In contrast, Na 2 SO 4 salinity triggered accumulation of sulphur-containing larger peptides, suggesting that excess sulphate incorporation leverage ion toxicity to produce specialized salt-tolerance associated metabolites. This high-depth picture of the willow metabolome underscores the importance of capturing plant adaptations to salt stress at organ-scale and considering ion-specific contributions to soil salinity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.202
Teacher spread0.189 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)Same topicPlant Stress Responses and ToleranceFrench-language works237,207