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Record W4401036726 · doi:10.5376/lgg.2024.15.0004

Advances in Phylogenomic Studies of the Fabaceae Family: Resolving Complex Evolutionary Relationships

2024· article· en· W4401036726 on OpenAlex
Xuanjun Fang

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueLegume Genomics and Genetics · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicBotanical Research and Chemistry
Canadian institutionsnot available
Fundersnot available
KeywordsFabaceaeEvolutionary biologyBiologyComputational biologyEcology

Abstract

fetched live from OpenAlex

The objective of this study is to summarize recent advances in phylogenomic studies of the Fabaceae family, with a focus on resolving complex evolutionary relationships. The Fabaceae family, one of the most diverse and economically significant plant families, presents unique challenges in understanding its evolutionary history due to its extensive diversity and complex speciation events. This study aims to highlight key findings and methodological innovations that have advanced our understanding of the phylogeny of this family. Recent phylogenomic studies have provided new insights into the evolutionary history of the Fabaceae family. High-throughput sequencing technologies and advanced bioinformatics tools have enabled the identification of major clades, divergence times, and lineage-specific adaptations. These studies have resolved previously unclear relationships and have offered a more comprehensive view of the evolutionary trajectories within the family. In conclusion, the study underscores that recent phylogenomic studies have significantly enhanced our understanding of the evolutionary relationships within the Fabaceae family. Continued research, coupled with the integration of emerging technologies, is crucial for further resolving complex phylogenetic relationships and supporting conservation efforts. The findings from these studies have important implications for plant genomics, agriculture, and biodiversity conservation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.915
Threshold uncertainty score0.115

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.069
GPT teacher head0.287
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it