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Record W4401208974 · doi:10.1101/2024.07.30.604739

Preparation of inexpensive, pre-stained molecular weight marker using proteins isolated from chicken egg for SDS PAGE and Western blot application

2024· preprint· en· W4401208974 on OpenAlexaff
Karthika KB Balaji, Vini VJ Jain, Sundarraj SR Rangasamy, Gokila GR Rajendran, Vinothkumar VK Kittappa, Arumugam Muruganandam

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldVeterinary
TopicAnimal health and immunology
Canadian institutionsEmergent BioSolutions (Canada)
Fundersnot available
KeywordsMolecular massWestern blotYolkBlotSize-exclusion chromatographyRecombinant DNAMolecular markerBiologyEgg whiteMolecular biologyBiochemistryEscherichia coliGeneChemistryFood scienceEnzyme

Abstract

fetched live from OpenAlex

Abstract Molecular weight markers, which are utilized in protein chemistry applications, including gel filtration chromatography, SDS-PAGE, and Western blotting, determine the molecular weight of distinct proteins that have been separated. These markers act as standards and are made of a variety of differently sized proteins that lie within a wide range of sizes corresponding to known molecular weights. They are indispensable tools in techniques such as protein analysis and characterization, as they may be used to estimate the approximate molecular weight of unknown proteins by comparing their movement pattern on the gel to established standards. Molecular weight markers can be obtained from multiple sources. There are many ways to obtain molecular weight markers, such as recombinant expression from organisms such as E. coli or mammalian cells as well as purification of proteins from organisms such as E. coli , bovine plasma, porcine muscle, and bovine milk. Moreover, the chicken egg white and egg yolk consist of proteins of varying molecular weights. This study aims to employ cost effective natural products such as chicken egg to create easily developed, reasonably priced protein markers with molecular weights that range from 250 to 14 kDa.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.002
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.302
Teacher spread0.280 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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