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Record W4401276098 · doi:10.5376/ijmeb.2024.14.0007

Integrative Insights into the Systematic Classification and Phylogenesis of Cucurbitaceae: A Comprehensive Review of Genetic and Genomic Advances

2024· review· en· W4401276098 on OpenAlexvenueno aff
Xiaodong Yang, Xuehao Chen

Bibliographic record

VenueInternational Journal of Molecular Evolution and Biodiversity · 2024
Typereview
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvances in Cucurbitaceae Research
Canadian institutionsnot available
FundersGovernment of Jiangsu ProvinceNational Natural Science Foundation of China
KeywordsBiologyPolyphylyEvolutionary biologySystematicsPhylogenetic treePhylogeneticsParaphylyCucurbitaceaeTaxonomy (biology)ZoologyGeneticsBotanyGeneClade

Abstract

fetched live from OpenAlex

The Cucurbitaceae family, with approximately 800 species across 130 genera, is of significant economic and botanical interest. Recent systematic reviews and phylogenetic analyses have provided new insights into the classification and evolutionary relationships within this diverse group. This systematic review synthesizes findings from multiple molecular studies, including chloroplast DNA sequences, nuclear ribosomal RNA genes, and various DNA regions from three plant genomes, to present an integrative perspective on the phylogeny of Cucurbitaceae. The traditional subfamilies and tribes have been re-evaluated, revealing weak support for the traditional subfamilies Cucurbitoideae and Nhandiroboideae, and the need for a reclassification of several genera due to polyphyly or paraphyly. Morphological characters such as flower and seed traits have been correlated with molecular data, providing a more comprehensive understanding of character evolution. Additionally, the review highlights the importance of molecular tools for species identification, particularly in genera with complex morphological variation. The proposed new classification system includes significant changes, with the establishment of new tribes and the re-circumscription of genera, reflecting a more natural phylogenetic order. This review underscores the dynamic nature of Cucurbitaceae systematics and the ongoing need for integrative approaches to understand the evolutionary history of this family.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Systematic review · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.525
Threshold uncertainty score0.525

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.340
Teacher spread0.314 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSystematic review
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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Same venueInternational Journal of Molecular Evolution and BiodiversitySame topicAdvances in Cucurbitaceae ResearchFrench-language works237,207