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Record W4401277234 · doi:10.3389/fcell.2024.1448209

The fragile X proteins’ enigma: to be or not to be nucleolar

2024· article· en· W4401277234 on OpenAlexaff
Édouard W. Khandjian, Tom Moss, Timothy M. Rose, Claude Robert, Laëtitia Davidovic

Bibliographic record

VenueFrontiers in Cell and Developmental Biology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetics and Neurodevelopmental Disorders
Canadian institutionsUniversité Laval
Fundersnot available
KeywordsCell biologyBiologyMolecular biology

Abstract

fetched live from OpenAlex

The contextThe Fragile X Messenger Ribonucleoprotein (FMRP, previously referred to as Fragile Mental Retardation Protein, see comments in Khandjian et al. (2022) is an RNA-binding protein whose mutations or absence cause Fragile X Syndrome (FXS).FMRP is mainly found in the cytoplasm and has been implicated in translation regulation.It has also been suggested to be present in the nucleolus and have a function in ribosome biogenesis.Here we wish to critically survey the data supporting this potentially important secondary function.FMRP is the archetype of a family of cytoplasmic RNA-binding proteins that includes the Fragile X related proteins FXR1P and FXR2P.The primary transcripts of the FMR1 and FXR1, genes undergo alternative splicing processes (Ashley et al., 1993;Verkerk et al., 1993;Sittler et al., 1996;Kirkpatrick et al., 1999), resulting in multiple protein isoforms.Twelve FMRP isoforms have been detected, nine for FXR1P and one for FXR2P.Members of the Fragile X protein family are widely expressed in human tissues and in other mammals, albeit at varying levels, and expression of their isoforms is subtly choreographed (Davidovic et al., 2006a).FMRP is highly abundant in brain and testis but is absent in striated muscles.FXR1P is strongly expressed in striated muscle and testis and lower levels are detected in the brain.FXR2P expression remains almost constant in all organs and tissues.While the FMR1 gene is present on chromosome X, FXR1 and FXR2 are autosomal genes present on chromosome 12 and 17, respectively.In humans, mutations in the FMR1 gene are the cause of FXS, a neurodevelopmental disorder that is characterized by development delay, intellectual disability, and in some cases autism spectrum disorders.FXS clinical presentation is highly heterogenous.FXS also affects peripheral tissues with patients exhibiting large everted ears, long face, increased cranial circumference, hypotonia, hyperlaxity of ligaments and macroorchidism (Hagerman et al., 2017).The most prevailing hypothesis regarding the physiopathology of FXS is that the absence of functional FMRP causes dysregulation of translation (Bassell and Warren, 2008;Darnell, 2011;Richter and Zhao, 2021).FXR1P is essential for muscle development (Mientjes et al., 2004;Huot et al., 2005) and recessive mutations in the muscle specific long isoform of FXR1P cause congenital multi-minicore myopathy in human and mice (Estañ et al., 2019), possibly by altering translation since FXR1P has been involved in translation regulation (Garnon et al., 2005;Huot et al., 2005;Vasudevan and Steitz, 2007).FXR2P is the least studied among the FXR proteins and, although it is also associated with

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Other · Consensus signal: none
Teacher disagreement score0.007
Threshold uncertainty score0.023

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.002
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0010.005
Scholarly communication0.0030.007
Open science0.0010.002
Research integrity0.0040.004
Insufficient payload (model declined to judge)0.0070.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.233
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreOther

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2024
Admission routes1
Has abstractyes

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