The fragile X proteins’ enigma: to be or not to be nucleolar
Bibliographic record
Abstract
The contextThe Fragile X Messenger Ribonucleoprotein (FMRP, previously referred to as Fragile Mental Retardation Protein, see comments in Khandjian et al. (2022) is an RNA-binding protein whose mutations or absence cause Fragile X Syndrome (FXS).FMRP is mainly found in the cytoplasm and has been implicated in translation regulation.It has also been suggested to be present in the nucleolus and have a function in ribosome biogenesis.Here we wish to critically survey the data supporting this potentially important secondary function.FMRP is the archetype of a family of cytoplasmic RNA-binding proteins that includes the Fragile X related proteins FXR1P and FXR2P.The primary transcripts of the FMR1 and FXR1, genes undergo alternative splicing processes (Ashley et al., 1993;Verkerk et al., 1993;Sittler et al., 1996;Kirkpatrick et al., 1999), resulting in multiple protein isoforms.Twelve FMRP isoforms have been detected, nine for FXR1P and one for FXR2P.Members of the Fragile X protein family are widely expressed in human tissues and in other mammals, albeit at varying levels, and expression of their isoforms is subtly choreographed (Davidovic et al., 2006a).FMRP is highly abundant in brain and testis but is absent in striated muscles.FXR1P is strongly expressed in striated muscle and testis and lower levels are detected in the brain.FXR2P expression remains almost constant in all organs and tissues.While the FMR1 gene is present on chromosome X, FXR1 and FXR2 are autosomal genes present on chromosome 12 and 17, respectively.In humans, mutations in the FMR1 gene are the cause of FXS, a neurodevelopmental disorder that is characterized by development delay, intellectual disability, and in some cases autism spectrum disorders.FXS clinical presentation is highly heterogenous.FXS also affects peripheral tissues with patients exhibiting large everted ears, long face, increased cranial circumference, hypotonia, hyperlaxity of ligaments and macroorchidism (Hagerman et al., 2017).The most prevailing hypothesis regarding the physiopathology of FXS is that the absence of functional FMRP causes dysregulation of translation (Bassell and Warren, 2008;Darnell, 2011;Richter and Zhao, 2021).FXR1P is essential for muscle development (Mientjes et al., 2004;Huot et al., 2005) and recessive mutations in the muscle specific long isoform of FXR1P cause congenital multi-minicore myopathy in human and mice (Estañ et al., 2019), possibly by altering translation since FXR1P has been involved in translation regulation (Garnon et al., 2005;Huot et al., 2005;Vasudevan and Steitz, 2007).FXR2P is the least studied among the FXR proteins and, although it is also associated with
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.002 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.000 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.005 |
| Scholarly communication | 0.003 | 0.007 |
| Open science | 0.001 | 0.002 |
| Research integrity | 0.004 | 0.004 |
| Insufficient payload (model declined to judge) | 0.007 | 0.002 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".